| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G328908_T01 |
| Family | GT9 |
| Protein Properties | Length: 467 Molecular Weight: 51436.6 Isoelectric Point: 6.5143 |
| Chromosome | Chromosome/Scaffold: 10 Start: 48351452 End: 48354107 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT9 | 187 | 436 | 1e-21 |
| VLKNRYYDLIISTRLAGIGHALFLFMSSARDKVGYVYPNVNSVGAGLFLNEMFKAPTNNLADGGYHMYKDMLEWIGRPAKNVPQQPTQPLRVSISKKLRA YVEDKYSRAGVEKGKYVVIHGIASDSVANMKSRGDDDCLLPLGHWAQIAKEISSGDRGLKPLFVIPHEKHRDEIEEEVGDDTSILFITTPGQLTCLINDS AGVVATNTAAVQLANARDKPCVALFSSAEKARLFLPYVEGKSSCTVISSA | |||
| Full Sequence |
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| Protein Sequence Length: 467 Download |
| MQTPTMSTSM ATTAPAKPPA PPRQCCRYLL LPSTGHRRSV AAWSAKKKNP WLDPFDDGPD 60 EEFDYQGMFS GGKQEEDPRP PEDPENPYGF LRFPQGYNPE LDSLASKVRG DVRRACCVVS 120 GGVYENVLFF PVVQMLKDRY PGVLVDVVAS ARGKQVYEMC KNVRYANVYD PDDDWPEPAE 180 YTHMLGVLKN RYYDLIISTR LAGIGHALFL FMSSARDKVG YVYPNVNSVG AGLFLNEMFK 240 APTNNLADGG YHMYKDMLEW IGRPAKNVPQ QPTQPLRVSI SKKLRAYVED KYSRAGVEKG 300 KYVVIHGIAS DSVANMKSRG DDDCLLPLGH WAQIAKEISS GDRGLKPLFV IPHEKHRDEI 360 EEEVGDDTSI LFITTPGQLT CLINDSAGVV ATNTAAVQLA NARDKPCVAL FSSAEKARLF 420 LPYVEGKSSC TVISSATGNL IDIDLNAVKN VVKDLEPAPS FALAQK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02201 | heptsyl_trn_III | 0.009 | 127 | 224 | 108 | + lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| cd03789 | GT1_LPS_heptosyltransferase | 0.0005 | 327 | 427 | 105 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| TIGR02193 | heptsyl_trn_I | 5.0e-5 | 267 | 429 | 165 | + lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| cd03789 | GT1_LPS_heptosyltransferase | 4.0e-5 | 127 | 221 | 95 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 4.0e-27 | 112 | 460 | 360 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC83246.1 | 0 | 6 | 465 | 1 | 461 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 6 | 465 | 1 | 425 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 465 | 1 | 468 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 1 | 466 | 1 | 466 | hypothetical protein LOC100275158 [Zea mays] |
| RefSeq | XP_002512720.1 | 0 | 45 | 464 | 54 | 466 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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