| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G364349_T01 |
| Family | PL1 |
| Protein Properties | Length: 454 Molecular Weight: 50139.3 Isoelectric Point: 8.8968 |
| Chromosome | Chromosome/Scaffold: 6 Start: 72007208 End: 72008992 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 167 | 372 | 0 |
| VTRARALWITFARDMVIELCQELIVSSDKTIDGRGAQVHIVGAQITLQNVRNVILHNLHVHDAAAHGGGAIRDSQHHWGVRGESDGDGVSVMGSSDIWID HLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQ GNRFRA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 454 Download |
| MAGSAVLRSP LSVLLYILAA VPATAAATPT DAAIDEAYAH LVNLTANQEY WAERAEAAHA 60 YNRAAYQTDP VAVVQRFNDG VHRATATRSR SLAHRARGPC TATNPIDQCW RCRRDWARDR 120 KRLARCAMGF GHRTTGGLAG KFYVVIDPSD DAADLVTPRK GTLRHAVTRA RALWITFARD 180 MVIELCQELI VSSDKTIDGR GAQVHIVGAQ ITLQNVRNVI LHNLHVHDAA AHGGGAIRDS 240 QHHWGVRGES DGDGVSVMGS SDIWIDHLSM SSCADGLVDA VDGSTAITVS NGHFTRHDHV 300 MLFGASDAAS KDREMQVTVA FNHFGKGLVQ RMPRCRHGFF HVVNNDYTHW LMYAIGGSRN 360 PTIISQGNRF RAVDDSRFKE VTKREYTQYS EYKNWVWKSQ DDLFLNGAFF NQSGGQNERK 420 YDRLDLIQAK GGQYAESLTR YAGALNCRVG RKC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-25 | 188 | 371 | 199 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-56 | 187 | 370 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-63 | 180 | 374 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY99621.1 | 0 | 1 | 453 | 1 | 448 | hypothetical protein OsI_21600 [Oryza sativa Indica Group] |
| RefSeq | NP_001056784.1 | 0 | 1 | 453 | 1 | 448 | Os06g0144900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150425.1 | 0 | 1 | 453 | 1 | 453 | LOC100284055 [Zea mays] |
| RefSeq | XP_002436463.1 | 0 | 28 | 453 | 33 | 465 | hypothetical protein SORBIDRAFT_10g003080 [Sorghum bicolor] |
| RefSeq | XP_002437815.1 | 0 | 45 | 453 | 41 | 444 | hypothetical protein SORBIDRAFT_10g003090 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 104 | 445 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 104 | 445 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-21 | 134 | 361 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 1e-16 | 189 | 390 | 128 | 354 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3krg_A | 0.000000000000006 | 169 | 368 | 110 | 323 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
