| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G374375_T01 |
| Family | GH28 |
| Protein Properties | Length: 414 Molecular Weight: 43165.6 Isoelectric Point: 8.1987 |
| Chromosome | Chromosome/Scaffold: 5 Start: 121179320 End: 121181165 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 400 | 0 |
| KNACEATGVQKIVIPPGNYLTGGLELKGPCKSSIIIRLDGNLLGTGDLSAYQRNWIEIENVENLSINGHGTIDGQGALVWSKNQCQHSYNCKILPNSLVL DFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRY KDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCAN NLPCQGVQLVNVDIKYNGSGNKTMAVCKNAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 414 Download |
| MAFISNVAVK AAGVAALLVV AVVSPAARAA AVAVAGGAPS VPAGPLDIAQ LGAKGDGKSD 60 STPMILKAWK NACEATGVQK IVIPPGNYLT GGLELKGPCK SSIIIRLDGN LLGTGDLSAY 120 QRNWIEIENV ENLSINGHGT IDGQGALVWS KNQCQHSYNC KILPNSLVLD FVTNVQIRGI 180 TLLNSKFFHL NIFECKNVLI DKVTVKAPGD SPNTDGIHIG DSSNVTISST TIGVGDDCIS 240 IGPGSKMIRI HGVKCGPGHG ISVGSLGRYK DEKDVEDVQV TGCTIAGTTN GLRIKSYEDS 300 KSSLKASKFL YEGITMDNVS YPIIIDQKYC PNNICVKSGA SKVAVNDVVF KNIHGTSNTP 360 EAITLNCANN LPCQGVQLVN VDIKYNGSGN KTMAVCKNAI GKSIGLAKEL ACI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-81 | 46 | 413 | 371 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-84 | 46 | 412 | 374 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-85 | 46 | 399 | 361 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-108 | 73 | 399 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-126 | 47 | 405 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD25264.1 | 0 | 40 | 413 | 49 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
| GenBank | EEC72677.1 | 0 | 92 | 413 | 63 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
| RefSeq | NP_001046194.1 | 0 | 40 | 413 | 76 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141808.1 | 0 | 36 | 413 | 41 | 418 | hypothetical protein LOC100273946 [Zea mays] |
| RefSeq | XP_002451722.1 | 0 | 37 | 413 | 86 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 132 | 383 | 110 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-18 | 47 | 402 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 8e-18 | 141 | 398 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-18 | 141 | 398 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 8e-18 | 141 | 398 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
