| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G386171_T01 |
| Family | GH28 |
| Protein Properties | Length: 318 Molecular Weight: 33880.7 Isoelectric Point: 7.9233 |
| Chromosome | Chromosome/Scaffold: 6 Start: 105636967 End: 105638109 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 29 | 306 | 0 |
| SPQLLRAVHVDNLVITGKGTLDGQGKEVWDNNKCAKKYDCKILPNSLVLDFVNNGTVSGITLLNAKFFHMNVFQCKDMTIKDVTITAPEDSPNTDGIHIG DSSEVTISGTTIGTGDDCISIGPGSSGINITGVTCGPGVGSLGRYKDEKDVTDVNVKDCTLKKTSNGVRIKAYEDAASVLTASKLHYENIAMEDVANPVI IDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPSAVSLLCSDKIPCSDITMDKVKVEYKGTNNKTMAVCNNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 318 Download |
| MPPRRRAPRR AAGREADAHD PQGRLPCWSP QLLRAVHVDN LVITGKGTLD GQGKEVWDNN 60 KCAKKYDCKI LPNSLVLDFV NNGTVSGITL LNAKFFHMNV FQCKDMTIKD VTITAPEDSP 120 NTDGIHIGDS SEVTISGTTI GTGDDCISIG PGSSGINITG VTCGPGVGSL GRYKDEKDVT 180 DVNVKDCTLK KTSNGVRIKA YEDAASVLTA SKLHYENIAM EDVANPVIID MKYCPNKICT 240 AKGDSKVTVK DVTFKNITGT SSTPSAVSLL CSDKIPCSDI TMDKVKVEYK GTNNKTMAVC 300 NNAKGSATSC LKELACL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-41 | 38 | 317 | 288 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-43 | 38 | 303 | 273 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-44 | 38 | 317 | 286 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-84 | 38 | 304 | 271 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-86 | 37 | 309 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PIR | 0 | 33 | 317 | 75 | 363 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
| RefSeq | NP_001105862.1 | 0 | 33 | 317 | 122 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35339 | 0 | 33 | 317 | 122 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| RefSeq | XP_002437275.1 | 0 | 25 | 317 | 114 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| RefSeq | XP_002438528.1 | 0 | 25 | 317 | 126 | 422 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-21 | 28 | 310 | 58 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-21 | 28 | 310 | 58 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-21 | 28 | 310 | 58 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-21 | 28 | 310 | 58 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-21 | 28 | 310 | 58 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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