| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G394259_T01 |
| Family | GH28 |
| Protein Properties | Length: 411 Molecular Weight: 43443.7 Isoelectric Point: 6.9803 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99366309 End: 99368586 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 65 | 399 | 0 |
| ASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKILPNSL VMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLG RYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAISLLC TAKVPCTGVTMDDVNVEYSGTNNKTMAICTNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MACTDNAMRA LFLLVLFCIV HGEKEESKGI DAKASGPGGS FDITKLGASG NGKTDSTKAV 60 QEAWASACGG TGKQTILIPK GDFLVGQLNF TGPCKGDVTI QVDGNLLATT DLSQYKEHGN 120 WIEILRVDNL VITGKGNLDG QGPAVWSKNS CTKKYDCKIL PNSLVMDFVN NGEVSGVTLL 180 NSKFFHMNMY QCKNMLIKDV TVTAPGDSPN TDGIHMGDSS GITITNTVIG VGDDCISIGP 240 GTSKVNITGV TCGPGHGISI GSLGRYKDEK DVTDINVKDC TLKKTMFGVR IKAYEDAASV 300 LTVSKIHYEN IKMEDSANPI FIDMKYCPNK LCTANGASKV TVKDVTFKNI TGTSSTPEAI 360 SLLCTAKVPC TGVTMDDVNV EYSGTNNKTM AICTNAKGST KGCLKELACF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-82 | 41 | 410 | 371 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-82 | 43 | 402 | 365 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-84 | 41 | 410 | 375 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-129 | 68 | 397 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-130 | 7 | 402 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD79098.1 | 0 | 2 | 410 | 3 | 411 | Zea m 13 allergen [Zea mays] |
| EMBL | CAA40851.1 | 0 | 3 | 410 | 1 | 408 | polygalacturonase [Zea mays] |
| EMBL | CAA46680.1 | 0 | 1 | 410 | 1 | 410 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 410 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35338 | 0 | 1 | 410 | 1 | 410 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 7e-17 | 138 | 364 | 80 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-17 | 138 | 364 | 80 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-17 | 138 | 364 | 80 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-17 | 138 | 364 | 80 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 7e-17 | 138 | 364 | 80 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
