| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G399421_T01 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42179.3 Isoelectric Point: 9.1297 |
| Chromosome | Chromosome/Scaffold: 4 Start: 66855570 End: 66857590 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 53 | 382 | 0 |
| KAACGSAGAVTMVVAPGTYYIGPVQFHGPCKASTLTFQLQGTLKAATDLKRFGNDWIEFGWVNGLTVAGGVIDGQGAASWPFNKCPIRKDCKVLPTSVLF VNSQNTVVRDVTSVNPKFFHMALLSVKNVRMSGLRIRAPPNSPNTDGIHIERSSGVSIVDTHIGTGDDCISVGQGNDNVEVSRVQCGPGHGMSVGSLGRY SGEGDVTRVHVRDMTFTGTTNGVRIKTWENSPSRSNAAHMVFENMVMKDVQNPIIIDQKYCPYYNCEHKYVSGVTLKDIHFRNIKGTATTPVAVLLRCGV PCQGLVLQDVDLRYKGQGATSAKCENAKAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MEARPRLLLV AAVAVFVSVS AAAGAAVVIN VKNYGAHGNG VNDDTKPLMA AWKAACGSAG 60 AVTMVVAPGT YYIGPVQFHG PCKASTLTFQ LQGTLKAATD LKRFGNDWIE FGWVNGLTVA 120 GGVIDGQGAA SWPFNKCPIR KDCKVLPTSV LFVNSQNTVV RDVTSVNPKF FHMALLSVKN 180 VRMSGLRIRA PPNSPNTDGI HIERSSGVSI VDTHIGTGDD CISVGQGNDN VEVSRVQCGP 240 GHGMSVGSLG RYSGEGDVTR VHVRDMTFTG TTNGVRIKTW ENSPSRSNAA HMVFENMVMK 300 DVQNPIIIDQ KYCPYYNCEH KYVSGVTLKD IHFRNIKGTA TTPVAVLLRC GVPCQGLVLQ 360 DVDLRYKGQG ATSAKCENAK AKYVGYQFPK PCSP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-78 | 31 | 392 | 374 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-81 | 29 | 390 | 372 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-82 | 30 | 392 | 369 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-95 | 62 | 380 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 29 | 392 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ62998.1 | 0 | 6 | 392 | 2 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
| GenBank | EEE68484.1 | 0 | 1 | 392 | 1 | 388 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061556.1 | 0 | 1 | 392 | 1 | 406 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437842.1 | 0 | 29 | 393 | 31 | 395 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
| RefSeq | XP_002444237.1 | 0 | 28 | 392 | 25 | 390 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-17 | 122 | 331 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000000001 | 76 | 378 | 34 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000001 | 76 | 378 | 34 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000001 | 76 | 378 | 34 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000000001 | 76 | 378 | 34 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
