| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G412207_T01 |
| Family | PL1 |
| Protein Properties | Length: 163 Molecular Weight: 17789.2 Isoelectric Point: 9.6188 |
| Chromosome | Chromosome/Scaffold: 10 Start: 101889767 End: 101891354 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 8 | 81 | 3.7e-25 |
| QVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLA | |||
| Full Sequence |
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| Protein Sequence Length: 163 Download |
| MVKLKLMQVM LLGHSDSYVK DKAMQVTIAF NHFGEGLIQR MPRCRHGYFH VVNNDYTHWE 60 MYAIGGSAEP TINSQGNRYL APTNPFAKEV TKRVETAHTV WKRWNWRSEG DLLLNGAYFT 120 PSGAGASASY SRASSLGAKS SSMVGTITLD AGALSCHKGA AC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 9.0e-7 | 13 | 94 | 87 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-29 | 13 | 79 | 67 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-31 | 13 | 82 | 70 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 8 | 162 | 214 | 368 | pectate lyase [Fragaria x ananassa] |
| GenBank | ACF84425.1 | 0 | 8 | 162 | 120 | 274 | unknown [Zea mays] |
| GenBank | ACF85413.1 | 0 | 1 | 162 | 1 | 162 | unknown [Zea mays] |
| GenBank | ACN35280.1 | 0 | 8 | 162 | 120 | 274 | unknown [Zea mays] |
| RefSeq | NP_001141589.1 | 0 | 8 | 162 | 312 | 466 | hypothetical protein LOC100273705 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 6e-38 | 8 | 155 | 197 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 6e-38 | 8 | 155 | 197 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_B | 0.00004 | 8 | 132 | 208 | 334 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_A | 0.00004 | 8 | 132 | 208 | 334 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1ooc_B | 0.00004 | 8 | 132 | 208 | 334 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
| Hydropathy |
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