| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G412207_T04 |
| Family | PL1 |
| Protein Properties | Length: 467 Molecular Weight: 49981.3 Isoelectric Point: 8.3568 |
| Chromosome | Chromosome/Scaffold: 10 Start: 101889767 End: 101897989 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 185 | 385 | 0 |
| LWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHVWVDHCSLS NCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYL A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MAAAGSSAAR ARRAGLAAAA AAALLVLVVV AVSAALPGGR VRVLDGLRQR STSVVAGGAR 60 RWLRDSSLPA ATTRGRADGD AGAGAVEDPE AVANDVHASI NNITARRNLG YLSCGTGNPI 120 DDCWRCDSDW HNNRKRLADC GIGFGRNAIG GRDGKIYVVT DPSDDDPVNP RKGTLRYAVI 180 QEEPLWIIFK RDMVITLKEE LIMNSFKTID GRGANVHIAN GACITIQYIT NVIIHGLHIH 240 DCKPTGNAMV RSSPSHYGWR TMADGDGVSI FGSSHVWVDH CSLSNCADGL IDAIMGSTAI 300 TVSNNYFTHH NEVMLLGHSD SYVKDKAMQV TIAFNHFGEG LIQRMPRCRH GYFHVVNNDY 360 THWEMYAIGG SAEPTINSQG NRYLAPTNPF AKEVTKRVET AHTVWKRWNW RSEGDLLLNG 420 AYFTPSGAGA SASYSRASSL GAKSSSMVGT ITLDAGALSC HKGAAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-26 | 205 | 398 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-70 | 198 | 383 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-79 | 192 | 386 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02420.2 | 0 | 42 | 466 | 36 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC76710.1 | 0 | 42 | 466 | 36 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
| GenBank | EEE60442.1 | 0 | 84 | 466 | 61 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
| RefSeq | NP_001141589.1 | 0 | 40 | 466 | 40 | 466 | hypothetical protein LOC100273705 [Zea mays] |
| RefSeq | NP_001147553.1 | 0 | 40 | 466 | 42 | 467 | pectate lyase 8 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 118 | 459 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 118 | 459 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-16 | 187 | 384 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000005 | 208 | 436 | 90 | 334 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000005 | 208 | 436 | 90 | 334 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
