| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G452150_T01 |
| Family | GH28 |
| Protein Properties | Length: 391 Molecular Weight: 41957.2 Isoelectric Point: 9.0032 |
| Chromosome | Chromosome/Scaffold: 1 Start: 144063284 End: 144064804 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 49 | 379 | 0 |
| WKAACGSAGAATMVVPPGTYYIGPVQFHGPCKASTLTFQLQGTLKAATDLKRFGNDWIEFGWVNGLTVAGGVIDGQGAASWPFNKCPIRKDCKVLPTSVL FVNNQNTVVRDVTSVNPKFFHMALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGISIMDTHISTGDDCISIGQGNDNVDVARVQCGPGHGMSVGSLGR YSGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKSNAAHMVFENMVMRDVQNPIIIDQKYCPYYNCEHKYVSGVTLNDIHFKNIKGTATTPVAVLLRCG VPCRGLVLQDVDLRYKGQGGTSAKCENAKAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 391 Download |
| MEARPRLLLV VVAIFVSISA VAAAVINVKN YGAHGNGVND DTKPLMAAWK AACGSAGAAT 60 MVVPPGTYYI GPVQFHGPCK ASTLTFQLQG TLKAATDLKR FGNDWIEFGW VNGLTVAGGV 120 IDGQGAASWP FNKCPIRKDC KVLPTSVLFV NNQNTVVRDV TSVNPKFFHM ALLSVKNIRM 180 SGLKISAPSN SPNTDGIHIE RSSGISIMDT HISTGDDCIS IGQGNDNVDV ARVQCGPGHG 240 MSVGSLGRYS GEGDVTRVHV RDMTFTGTMN GVRIKTWENS PSKSNAAHMV FENMVMRDVQ 300 NPIIIDQKYC PYYNCEHKYV SGVTLNDIHF KNIKGTATTP VAVLLRCGVP CRGLVLQDVD 360 LRYKGQGGTS AKCENAKAKY LGYQFPKPCP * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-78 | 30 | 387 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-78 | 30 | 389 | 372 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-82 | 30 | 389 | 365 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-95 | 60 | 377 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 29 | 390 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ62998.1 | 0 | 26 | 389 | 29 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
| GenBank | EEE68484.1 | 0 | 1 | 390 | 1 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061556.1 | 0 | 1 | 390 | 1 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437842.1 | 0 | 26 | 389 | 31 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
| RefSeq | XP_002444237.1 | 0 | 1 | 390 | 1 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-17 | 119 | 345 | 117 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000000001 | 59 | 375 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000001 | 59 | 375 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000001 | 59 | 375 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000000001 | 59 | 375 | 24 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
