| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G467435_T01 |
| Family | GH28 |
| Protein Properties | Length: 503 Molecular Weight: 53466.8 Isoelectric Point: 5.0629 |
| Chromosome | Chromosome/Scaffold: 3 Start: 60251653 End: 60254402 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 127 | 456 | 0 |
| KAACSSDSAAATLLVPSDGVFTIASTIFSGPCKPDLTFQIDGVLMPPDGPASWPATDSRKQWIVFYKADRLTLAGEGTIEGNGEEWWDLPCKPHRGPNGS TLRGPCDSPALIRFFSSNDVTVCGLRIENSPQFHLRFDDCERVRVDGLFVSSPASSPNTDGVHVENTKSVQILNSRIYNGDDCVSIGAGCSDVHVENITC GHGHGISIGSLGVHNTHACVSNVTVRNVRILDSDNGVRIKTWQGGAGAVSAVEFTGVQMQNVKNCIVIDQYYCLGHGCANQTSAVRVAGVAYRDIHGTYN PQAGAPIRLACSDAVACTDITMSGVELLPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 503 Download |
| MRPAPETSTR RPQLRRRRPV PLVTVAVSLA LISLACLPVF ADASRALHRD REEHRRQHHR 60 TEDKKSRVSL PPDADGDSPP EPPDSGGAPP PADDSDCGNV FDVRAFGASG DGSCVDDDTA 120 AFRAAWKAAC SSDSAAATLL VPSDGVFTIA STIFSGPCKP DLTFQIDGVL MPPDGPASWP 180 ATDSRKQWIV FYKADRLTLA GEGTIEGNGE EWWDLPCKPH RGPNGSTLRG PCDSPALIRF 240 FSSNDVTVCG LRIENSPQFH LRFDDCERVR VDGLFVSSPA SSPNTDGVHV ENTKSVQILN 300 SRIYNGDDCV SIGAGCSDVH VENITCGHGH GISIGSLGVH NTHACVSNVT VRNVRILDSD 360 NGVRIKTWQG GAGAVSAVEF TGVQMQNVKN CIVIDQYYCL GHGCANQTSA VRVAGVAYRD 420 IHGTYNPQAG APIRLACSDA VACTDITMSG VELLPAGGDD GALLADPYCW NAYGVMETLT 480 LPPVYCLLEG SPESLQDPLT SC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 5.0e-63 | 99 | 502 | 411 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-64 | 101 | 452 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-79 | 103 | 451 | 354 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-82 | 130 | 451 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-94 | 100 | 483 | 386 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN29256.1 | 0 | 171 | 502 | 1 | 332 | unknown [Zea mays] |
| RefSeq | NP_001042921.1 | 0 | 99 | 502 | 344 | 759 | Os01g0329300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001132604.2 | 0 | 1 | 502 | 1 | 502 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | XP_002455572.1 | 0 | 98 | 502 | 260 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
| RefSeq | XP_002455574.1 | 0 | 1 | 502 | 2 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-26 | 128 | 453 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-26 | 128 | 453 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-26 | 128 | 453 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-26 | 128 | 453 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-26 | 128 | 453 | 1 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
