| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G467435_T02 |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 39256.1 Isoelectric Point: 5.6831 |
| Chromosome | Chromosome/Scaffold: 3 Start: 60251653 End: 60254239 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 192 | 321 | 4.4e-34 |
| CCCHPRSIGSLGVHNTHACVSNVTVRNVRILDSDNGVRIKTWQGGAGAVSAVEFTGVQMQNVKNCIVIDQYYCLGHGCANQTSAVRVAGVAYRDIHGTYN PQAGAPIRLACSDAVACTDITMSGVELLPA | |||
| GH28 | 10 | 162 | 0 |
| PATDSRKQWIVFYKADRLTLAGEGTIEGNGEEWWDLPCKPHRGPNGSTLRGPCDSPALIRFFSSNDVTVCGLRIENSPQFHLRFDDCERVRVDGLFVSSP ASSPNTDGVHVENTKSVQILNSRIYNGDDCVSIGAGCSDVHVENITCGHGHGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MPPDGPASWP ATDSRKQWIV FYKADRLTLA GEGTIEGNGE EWWDLPCKPH RGPNGSTLRG 60 PCDSPALIRF FSSNDVTVCG LRIENSPQFH LRFDDCERVR VDGLFVSSPA SSPNTDGVHV 120 ENTKSVQILN SRIYNGDDCV SIGAGCSDVH VENITCGHGH GIRYLSVCHS LTHQRASMAR 180 GTVCSEPDAA SCCCHPRSIG SLGVHNTHAC VSNVTVRNVR ILDSDNGVRI KTWQGGAGAV 240 SAVEFTGVQM QNVKNCIVID QYYCLGHGCA NQTSAVRVAG VAYRDIHGTY NPQAGAPIRL 300 ACSDAVACTD ITMSGVELLP AGGDDGALLA DPYCWNAYGV METLTLPPVY CLLEGSPESL 360 QDPLTSC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-48 | 14 | 317 | 308 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-51 | 15 | 367 | 359 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-62 | 17 | 316 | 303 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-74 | 3 | 348 | 348 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-75 | 7 | 316 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN29256.1 | 0 | 1 | 367 | 1 | 332 | unknown [Zea mays] |
| RefSeq | NP_001042921.1 | 0 | 1 | 367 | 414 | 759 | Os01g0329300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001132604.2 | 0 | 1 | 367 | 171 | 502 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | XP_002455572.1 | 0 | 1 | 367 | 331 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
| RefSeq | XP_002455574.1 | 0 | 1 | 367 | 189 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-20 | 16 | 318 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-20 | 16 | 318 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-20 | 16 | 318 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-20 | 16 | 318 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-20 | 16 | 318 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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