| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G472060_T01 |
| Family | PL1 |
| Protein Properties | Length: 484 Molecular Weight: 51010.2 Isoelectric Point: 6.6922 |
| Chromosome | Chromosome/Scaffold: 1 Start: 235441033 End: 235444718 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 141 | 341 | 0 |
| WIVFASDMAIRLNEELLVNSYKTIDGRGARVHVGGGGACITLQYVSNVIIHNVHVHDCVPAGNADVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALW RCADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIGGSAGPTINSQGNRYI A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 484 Download |
| MARAPKSAGI ALSLLLLAAA AKASAFPLLN SSLPDPAAVV ADLHSKVATS RRRMQESGGG 60 GGGGGGGCLT GNPIDDCWRC AGTDWRQDRQ RLADCGIGFG RNALGGKGGP VYVVTDPSDR 120 DPVNPSPGTL RHAAIQEGPL WIVFASDMAI RLNEELLVNS YKTIDGRGAR VHVGGGGACI 180 TLQYVSNVII HNVHVHDCVP AGNADVRSSP THYGWRTRSD GDGISLFGAR DVWVDHCALW 240 RCADGLVDAI MGSTAITVSN SYFAHHDEVM LLGASDAYLP DSGMQVTIAF NRFGPGLVQR 300 MPRCRRGYFH IVNNDYTSWE MYAIGGSAGP TINSQGNRYI APADPNAKEV TKRVETAEGQ 360 WAGWNWRTEG DMMVNGAFFV PSGEGMEDIY GKASSTDPKS SALVDVLTQN AGVLGDPRND 420 AEETGYRGVN YAGGRTGGGG GYGYGYLGMV YAGGGDQRWR SHSALSLVSS AITVVALGCL 480 HLL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-21 | 222 | 337 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-54 | 206 | 339 | 142 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-60 | 147 | 342 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31780.1 | 0 | 1 | 417 | 1 | 417 | unknown [Zea mays] |
| DDBJ | BAF26675.2 | 0 | 29 | 418 | 30 | 419 | Os10g0457200 [Oryza sativa Japonica Group] |
| GenBank | EEC67092.1 | 0 | 29 | 483 | 30 | 491 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
| RefSeq | NP_001147972.1 | 0 | 1 | 483 | 1 | 483 | pectate lyase 12 [Zea mays] |
| RefSeq | XP_002464529.1 | 0 | 1 | 483 | 1 | 482 | hypothetical protein SORBIDRAFT_01g020180 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 72 | 414 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 72 | 414 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-18 | 130 | 340 | 38 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000002 | 156 | 339 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000002 | 163 | 316 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
