| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM5G831200_T01 |
| Family | GH28 |
| Protein Properties | Length: 517 Molecular Weight: 54603.5 Isoelectric Point: 4.7889 |
| Chromosome | Chromosome/Scaffold: 5 Start: 74450298 End: 74452700 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 127 | 465 | 0 |
| TACSLDNAVFLVPAGRRYKVGAIQFVGPCKDRRMIIQIQGTVVAPEEPSEWDPRSPRLWLLFSGLAGARIQGGGVIDGSGSKWWASSCKINRSNPCRPAP TAVTIDSCRGVRVRGLRVQNAQQMHVTVSRSRGVRVAGLRIDAPEDSPNTDGIHVAESTAVTIQSCRIGTGDDCISIVNGSFGVKMRDIDCGPGHGISIG SLGKGGAFAAVADVALDRARISRAQNGVRIKTWQGGAGYVRGVRFADVAVDGVDHPIVIDQFYCDVTRRQRDGGGGGACANQTSAVAVSDVSYRNISGTS RRAEAIRFACSDAVPCTGIVLSNINLRRADDDGEVQTVC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 517 Download |
| MGAAPAARRC ALLLALVVLV AAAGERGGSG AGGEAGAEQV LRLWSSADSA RGGEAVDEED 60 RFFRWEWEEE EEDDDNNDEE EGEEEDDHAV VVQRKGACRN VVNVDSFGAA GDGVADDTQA 120 FASAWKTACS LDNAVFLVPA GRRYKVGAIQ FVGPCKDRRM IIQIQGTVVA PEEPSEWDPR 180 SPRLWLLFSG LAGARIQGGG VIDGSGSKWW ASSCKINRSN PCRPAPTAVT IDSCRGVRVR 240 GLRVQNAQQM HVTVSRSRGV RVAGLRIDAP EDSPNTDGIH VAESTAVTIQ SCRIGTGDDC 300 ISIVNGSFGV KMRDIDCGPG HGISIGSLGK GGAFAAVADV ALDRARISRA QNGVRIKTWQ 360 GGAGYVRGVR FADVAVDGVD HPIVIDQFYC DVTRRQRDGG GGGACANQTS AVAVSDVSYR 420 NISGTSRRAE AIRFACSDAV PCTGIVLSNI NLRRADDDGE VQTVCNCAVG LDYGRVQPAA 480 DCLRSSTCGG TPDGHHHHDD DDEEQGKDDA VLHTEL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-77 | 103 | 456 | 357 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-85 | 100 | 487 | 391 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-88 | 134 | 452 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-104 | 102 | 478 | 380 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-128 | 101 | 487 | 388 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD07736.1 | 0 | 94 | 490 | 73 | 459 | putative polygalacturonase [Oryza sativa Japonica Group] |
| GenBank | EEC72414.1 | 0 | 94 | 490 | 73 | 459 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
| RefSeq | NP_001045783.1 | 0 | 94 | 491 | 100 | 487 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002317091.1 | 0 | 69 | 516 | 3 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002453250.1 | 0 | 38 | 516 | 45 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 196 | 389 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-20 | 199 | 453 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-20 | 199 | 453 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-20 | 199 | 453 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-20 | 199 | 453 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
