| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM5G838196_T02 |
| Family | GT9 |
| Protein Properties | Length: 472 Molecular Weight: 52005.3 Isoelectric Point: 6.7794 |
| Chromosome | Chromosome/Scaffold: 4 Start: 58349439 End: 58352989 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT9 | 192 | 439 | 4.9e-22 |
| VLKNRYYDLIVSTRLAGIGHALFLFMSSARDKVGYVYPNVNSVGAGLFLNEMFKAPTNNLADGGYHMYKDMLEWIGRPAKNVPRQPTQPLRVSISKKLRA YVEDKYSRAGVEKGKYVVVHGIASDSVASMTSRGDDDCLLPLEHWAQIAKEISSGDKGLKPLFVIPHDKHREEVEEEVGDDTNILFITTPGQLTCLINDS AGVVATNTAAVQLANARDKPCVALFSSAEKARLFLPYVEDKSSCTVIS | |||
| Full Sequence |
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| Protein Sequence Length: 472 Download |
| MQTPAMSTST ATTTRAMAPA KPPARRHCCS YLLLLLPSTG HRRSVAAWSA KKKNPWLDPF 60 DDGPDEEFDY QGMFSGGKQE EDPRPPEDPA NPYGFLRFPQ GYNPELDSLA SKVRGDVRRA 120 CCVVSGGVYE NVLFLPVVQM LKDRYPGVLV DVVASPRGKQ VYEMCKNVRY ANVYDPDDDW 180 PEPAEYTHML GVLKNRYYDL IVSTRLAGIG HALFLFMSSA RDKVGYVYPN VNSVGAGLFL 240 NEMFKAPTNN LADGGYHMYK DMLEWIGRPA KNVPRQPTQP LRVSISKKLR AYVEDKYSRA 300 GVEKGKYVVV HGIASDSVAS MTSRGDDDCL LPLEHWAQIA KEISSGDKGL KPLFVIPHDK 360 HREEVEEEVG DDTNILFITT PGQLTCLIND SAGVVATNTA AVQLANARDK PCVALFSSAE 420 KARLFLPYVE DKSSCTVISS MTGKLIDIDI NAVKNAVKDL EPAPSFALAQ K* 480 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01075 | Glyco_transf_9 | 0.008 | 193 | 416 | 230 | + Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core. | ||
| cd03789 | GT1_LPS_heptosyltransferase | 0.0005 | 332 | 428 | 101 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| TIGR02193 | heptsyl_trn_I | 2.0e-5 | 272 | 434 | 165 | + lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| cd03789 | GT1_LPS_heptosyltransferase | 8.0e-6 | 132 | 226 | 95 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 4.0e-28 | 117 | 465 | 360 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC83246.1 | 0 | 6 | 470 | 1 | 461 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 6 | 470 | 1 | 425 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 470 | 1 | 468 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 1 | 471 | 1 | 466 | hypothetical protein LOC100275158 [Zea mays] |
| RefSeq | XP_002512720.1 | 0 | 50 | 469 | 54 | 466 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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