| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM5G850567_T01 |
| Family | CBM22 |
| Protein Properties | Length: 576 Molecular Weight: 63518.3 Isoelectric Point: 7.3949 |
| Chromosome | Chromosome/Scaffold: 9 Start: 147968842 End: 147972083 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 51 | 167 | 2.9e-22 |
| ILRNANFSAGLQGWSAFGHGAVEEGASASGNSYGVARNRTRPYQSVSQKVYLQNDTHYTLSAWLQVSNGSADIRAVVKTDGDFVHAGVVEARSGCWSILK GGLTAPASGAAELYFES | |||
| GH10 | 227 | 490 | 0 |
| RSGFPLGSAMGAEILRSPAYQRWFASRFTVATFENEMKWSSTERLRGREDYSVPDAMLRFARSHGIAVRGHNVFWDQPGQQPAWVRSLPYRQLLQATARR IRSVMSRYAGQVVAWDVVNENLHFRFFEDRFGRDASAELYRKAHQMDGQALVSMNEFNTLEWPGDPKAGPSKYLGKLFQIKEFPGNTNDARMAIGLQGHF SVPSIPYIRAALDTLSRANAPIWLTEIDVAPGPNQAYHLEQILREVYAHPAVHGIILWTARHRQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 576 Download |
| MGRRALTILP LLWVAMLSGG AAAVMQSLPY DYSSSAECLP EPLEPQYGGG ILRNANFSAG 60 LQGWSAFGHG AVEEGASASG NSYGVARNRT RPYQSVSQKV YLQNDTHYTL SAWLQVSNGS 120 ADIRAVVKTD GDFVHAGVVE ARSGCWSILK GGLTAPASGA AELYFESNTT ADIWVDSASL 180 QPFSREEWAA HHSAAIKSAR KKAVRLRARG SAGEPVPGAH VRIEHVRSGF PLGSAMGAEI 240 LRSPAYQRWF ASRFTVATFE NEMKWSSTER LRGREDYSVP DAMLRFARSH GIAVRGHNVF 300 WDQPGQQPAW VRSLPYRQLL QATARRIRSV MSRYAGQVVA WDVVNENLHF RFFEDRFGRD 360 ASAELYRKAH QMDGQALVSM NEFNTLEWPG DPKAGPSKYL GKLFQIKEFP GNTNDARMAI 420 GLQGHFSVPS IPYIRAALDT LSRANAPIWL TEIDVAPGPN QAYHLEQILR EVYAHPAVHG 480 IILWTARHRQ GCYVMCLTDN NFQNLPTGDV VDRLIAEWKT HSHAGVADAD GYYEAELFHG 540 DYKVTVSHPA ANSTVVQSLS VDRETDPDTE FTIHV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-8 | 49 | 171 | 133 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-26 | 222 | 490 | 294 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-46 | 230 | 484 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-71 | 263 | 511 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 1 | 575 | 1 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN31540.1 | 0 | 1 | 575 | 1 | 575 | unknown [Zea mays] |
| GenBank | EEE58525.1 | 0 | 1 | 575 | 1 | 579 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| GenBank | EEE58525.1 | 0 | 22 | 461 | 559 | 986 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 1 | 575 | 9 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-25 | 232 | 484 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xas_A | 4e-24 | 227 | 487 | 11 | 269 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 1v0n_A | 2e-23 | 227 | 487 | 11 | 269 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 1v0m_A | 2e-23 | 227 | 487 | 11 | 269 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 1v0l_A | 2e-23 | 227 | 487 | 11 | 269 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
