| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM5G882418_T01 |
| Family | GH28 |
| Protein Properties | Length: 254 Molecular Weight: 26963.3 Isoelectric Point: 4.9849 |
| Chromosome | Chromosome/Scaffold: 1 Start: 295308871 End: 295310251 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 9 | 186 | 1.7e-39 |
| HPDSSTNVCINHCYVRNGGDVIVIKSGWDEYGISFAQPSSNISISDITGETRGGSGIAFGSEMSGGISEVRAVGLRIVNSLHGIRIKTAPGRGGYVENVY IADVSMDNVSMAIRITGNYGEHPDDKYDSTALPVISNITIKDVVGVNIGVAGILEGIQGDNFSNICLSNVSLSVQSAH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 254 Download |
| MVLIQLQTHP DSSTNVCINH CYVRNGGDVI VIKSGWDEYG ISFAQPSSNI SISDITGETR 60 GGSGIAFGSE MSGGISEVRA VGLRIVNSLH GIRIKTAPGR GGYVENVYIA DVSMDNVSMA 120 IRITGNYGEH PDDKYDSTAL PVISNITIKD VVGVNIGVAG ILEGIQGDNF SNICLSNVSL 180 SVQSAHPWNC SLIEGYSNSV IPESCEQLRS NCRQTSICYD GSSSSVMSVQ QPRHTSPTSR 240 LLDLFTGVGF ILV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-6 | 9 | 155 | 151 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-6 | 12 | 161 | 156 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 6.0e-8 | 9 | 190 | 205 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-12 | 9 | 205 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-19 | 10 | 131 | 123 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF99735.1 | 0 | 10 | 251 | 218 | 460 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN28107.1 | 0 | 10 | 253 | 234 | 477 | unknown [Zea mays] |
| GenBank | ACN35154.1 | 0 | 10 | 206 | 234 | 430 | unknown [Zea mays] |
| RefSeq | NP_001151479.1 | 0 | 10 | 253 | 234 | 477 | polygalacturonase [Zea mays] |
| RefSeq | XP_002463589.1 | 0 | 10 | 243 | 218 | 451 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-16 | 10 | 177 | 243 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-16 | 10 | 177 | 243 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-16 | 10 | 177 | 243 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-16 | 10 | 177 | 243 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000007 | 10 | 184 | 206 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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