| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM5G882418_T02 |
| Family | GH28 |
| Protein Properties | Length: 478 Molecular Weight: 51686.5 Isoelectric Point: 6.5561 |
| Chromosome | Chromosome/Scaffold: 1 Start: 295308876 End: 295312764 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 73 | 410 | 0 |
| ADKGGAQLFVPAGRWLTGSFHLISHLTLSLDKDAIIIGSPDSSHWPVIDPLPSYGRGRDLPGKRHQSLIFGLNLTDVIITGANGSIDGQGAIWWGWFHNH TLNYTRPHLVELMYSTNVVISNLTFKNSPFWNIHPVYCSQVLVRHVTILAPLNSPNTDGVTPDSSTNVCINHCYVRNGGDVIVIKSGWDEYGISFAQPSS NISISDITGETRGGSGIAFGSEMSGGISEVRAVGLRIVNSLHGIRIKTAPGRGGYVENVYIADVSMDNVSMAIRITGNYGEHPDDKYDSTALPVISNITI KDVVGVNIGVAGILEGIQGDNFSNICLSNVSLSVQSAH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 478 Download |
| MKRSASLFQV LLVFTAVIEI QWSTVSSIYC KDMPPNVYRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAQL FVPAGRWLTG SFHLISHLTL SLDKDAIIIG SPDSSHWPVI 120 DPLPSYGRGR DLPGKRHQSL IFGLNLTDVI ITGANGSIDG QGAIWWGWFH NHTLNYTRPH 180 LVELMYSTNV VISNLTFKNS PFWNIHPVYC SQVLVRHVTI LAPLNSPNTD GVTPDSSTNV 240 CINHCYVRNG GDVIVIKSGW DEYGISFAQP SSNISISDIT GETRGGSGIA FGSEMSGGIS 300 EVRAVGLRIV NSLHGIRIKT APGRGGYVEN VYIADVSMDN VSMAIRITGN YGEHPDDKYD 360 STALPVISNI TIKDVVGVNI GVAGILEGIQ GDNFSNICLS NVSLSVQSAH PWNCSLIEGY 420 SNSVIPESCE QLRSNCRQTS ICYDGSSSSV MSVQQPRHTS PTSRLLDLFT GVGFILV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-23 | 10 | 414 | 440 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-24 | 40 | 379 | 347 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-26 | 41 | 385 | 351 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-32 | 144 | 429 | 296 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-53 | 43 | 355 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28107.1 | 0 | 1 | 477 | 1 | 477 | unknown [Zea mays] |
| GenBank | ACN35154.1 | 0 | 1 | 430 | 1 | 430 | unknown [Zea mays] |
| RefSeq | NP_001051812.1 | 0 | 1 | 467 | 1 | 468 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151479.1 | 0 | 1 | 477 | 1 | 477 | polygalacturonase [Zea mays] |
| RefSeq | XP_002463589.1 | 0 | 17 | 467 | 1 | 451 | hypothetical protein SORBIDRAFT_01g002550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.00053e-42 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.00053e-42 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.00053e-42 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.00053e-42 | 41 | 401 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-19 | 87 | 408 | 52 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
