| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01000105001 |
| Family | GH43 |
| Protein Properties | Length: 435 Molecular Weight: 50149.7 Isoelectric Point: 8.1437 |
| Chromosome | Chromosome/Scaffold: 7 Start: 15309043 End: 15319149 |
| Description | glycosyl hydrolase family protein 43 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH43 | 128 | 351 | 2.8e-34 |
| RMYYWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDLWTWKFEGIVLAAEETDEAHDLHKSNVLERPKVIYNDRTGKYVMWMHVDDTNYTKAAVGVAMS DSPTGPFDYLYSKRPHGFDSRDMTLFRDEDGVAYLIYSSEDNSELHIGPLNQDYLDVTHVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAH AAESIMGPWETMGNPCIGGNKIFR | |||
| Full Sequence |
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| Protein Sequence Length: 435 Download |
| MRMRNKYRKP TTFRCNAGSR CSFHHHPLLR ELEQVEEENI QIPPPKGKRS PRAAKRRPKR 60 PTTLIDEFLD ESSQIRHLFF PDQKTAIDPM QEAGNDSFCY YPGRIWLDTD GNPIQAHGGG 120 ILYDKRSRMY YWYGEYKDGP TYHAHKKAAA RVDIIGVGCY SSKDLWTWKF EGIVLAAEET 180 DEAHDLHKSN VLERPKVIYN DRTGKYVMWM HVDDTNYTKA AVGVAMSDSP TGPFDYLYSK 240 RPHGFDSRDM TLFRDEDGVA YLIYSSEDNS ELHIGPLNQD YLDVTHVMRR ILVGQHREAP 300 ALFKHQGTYY MITSGCTGWA PNEALAHAAE SIMGPWETMG NPCIGGNKIF RLTTFFAQST 360 FVVPLPGITG SFIFMADRWN PADLRDSRYV WLPLTVGGAA DHPLEYNFGF PLWSRVSIYW 420 HRRWRLPYGW REQK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd08990 | GH43_AXH_like | 7.0e-21 | 159 | 340 | 196 | + Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
| cd09004 | GH43_bXyl | 2.0e-21 | 158 | 341 | 195 | + Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
| cd08978 | GH_F | 3.0e-48 | 130 | 394 | 276 | + Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. GH62 are also predicted to be inverting enzymes. A common structural feature of both, GH43 and GH62 enzymes, is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
| cd08985 | GH43_6 | 3.0e-131 | 114 | 396 | 284 | + Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU19498.1 | 0 | 25 | 434 | 57 | 465 | unknown [Glycine max] |
| EMBL | CBI33680.1 | 0 | 1 | 434 | 1 | 434 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_190557.1 | 0 | 25 | 434 | 56 | 464 | glycosyl hydrolase family protein 43 [Arabidopsis thaliana] |
| RefSeq | NP_201555.2 | 0 | 24 | 427 | 61 | 466 | glycosyl hydrolase family protein 43 [Arabidopsis thaliana] |
| RefSeq | XP_002525277.1 | 0 | 1 | 434 | 32 | 499 | beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vt2_F | 0 | 108 | 418 | 50 | 346 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 3vt2_E | 0 | 108 | 418 | 50 | 346 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 3vt2_D | 0 | 108 | 418 | 50 | 346 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 3vt2_C | 0 | 108 | 418 | 50 | 346 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 3vt2_B | 0 | 108 | 418 | 50 | 346 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO374362 | 350 | 89 | 432 | 0 |
| GO856153 | 335 | 97 | 431 | 0 |
| EY703730 | 295 | 111 | 405 | 0 |
| GO801753 | 300 | 134 | 433 | 0 |
| JG864684 | 276 | 148 | 423 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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