| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01000525001 |
| Family | CE8 |
| Protein Properties | Length: 342 Molecular Weight: 38111.7 Isoelectric Point: 9.0939 |
| Chromosome | Chromosome/Scaffold: 5 Start: 13691793 End: 13693411 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 45 | 329 | 0 |
| ITVDQSGHGNFRTIQSAINSIPSNNNRWICIYVKAGIYREKVVIPMDKPFIFLRGAGRKRTFIVWGDHLSISQSPTFSMMADNFVARGISFMNNYNLPVL KNRNPRKPAVAAMIAGDKASFYKCSFYGVQDTLWDVEGRHYFKGCFIEGAVDFIFGAGQSIYEKCMISVVGRALGPGIRGFITAQGRDSPKETNGFVFKE CKVTGDGQAYLGRPWRVYSRVLFYKTEMPGIIVPAGWDPWNYSGKEQLLTYAEHDCYGAGADTSKRVSWEKRLSTSTVMGMTSLG | |||
| Full Sequence |
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| Protein Sequence Length: 342 Download |
| MNGPLVFPPK ALEPSLNAEY LILIQCYCLS IISESSPFSF SYHTITVDQS GHGNFRTIQS 60 AINSIPSNNN RWICIYVKAG IYREKVVIPM DKPFIFLRGA GRKRTFIVWG DHLSISQSPT 120 FSMMADNFVA RGISFMNNYN LPVLKNRNPR KPAVAAMIAG DKASFYKCSF YGVQDTLWDV 180 EGRHYFKGCF IEGAVDFIFG AGQSIYEKCM ISVVGRALGP GIRGFITAQG RDSPKETNGF 240 VFKECKVTGD GQAYLGRPWR VYSRVLFYKT EMPGIIVPAG WDPWNYSGKE QLLTYAEHDC 300 YGAGADTSKR VSWEKRLSTS TVMGMTSLGY INAEGWLNGQ P* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02682 | PLN02682 | 2.0e-92 | 44 | 337 | 305 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 7.0e-100 | 43 | 337 | 296 | + Probable pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-104 | 45 | 337 | 293 | + putative pectinesterase | ||
| PLN02176 | PLN02176 | 2.0e-108 | 43 | 341 | 300 | + putative pectinesterase | ||
| PLN02497 | PLN02497 | 0 | 21 | 341 | 321 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79494.1 | 0 | 41 | 341 | 28 | 327 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI40838.1 | 0 | 1 | 341 | 1 | 341 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189055.1 | 0 | 21 | 341 | 10 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263748.1 | 0 | 41 | 341 | 28 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518106.1 | 0 | 40 | 341 | 43 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 45 | 337 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-37 | 47 | 313 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 6e-21 | 41 | 309 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 6e-21 | 41 | 309 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 6e-21 | 41 | 309 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV984237 | 290 | 54 | 338 | 0 |
| EX315894 | 275 | 69 | 338 | 0 |
| EX317112 | 274 | 70 | 338 | 0 |
| EE476551 | 260 | 5 | 262 | 0 |
| AW036464 | 211 | 104 | 314 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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