| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01000592001 |
| Family | PL1 |
| Protein Properties | Length: 404 Molecular Weight: 44334.9 Isoelectric Point: 6.9695 |
| Chromosome | Chromosome/Scaffold: 1 Start: 6744493 End: 6746449 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 118 | 322 | 0 |
| QKEPLWIIFQRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNANVRDSPDHYGWRTISDGDGVSIFGGSHVWVDH CSLSNCNDGLVDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWEMYAIGGSAEPTINSQG NRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MAIPLSVLLF LLPLLSPTFI SSSPVQDPEL VVEEVHKRIN ASRRNLGFLS CGTGNPIDDC 60 WRCDPDWEKN RQGLADCSIG FGRHAIGGRD GEIYVVTDSG DYDPVNPKPG TLRYAVIQKE 120 PLWIIFQRDM VIKLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQYVTNII IHGLNIHDCK 180 QGGNANVRDS PDHYGWRTIS DGDGVSIFGG SHVWVDHCSL SNCNDGLVDA IHGSTAITIS 240 NNYMTHHNKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYSHW 300 EMYAIGGSAE PTINSQGNRF LAPDDRFSKE VTKHEDAPQS QWKNWNWRSE GDLLLNGAFF 360 TASGAGASSS YAKASSLGAR PSSLITTITN GAGALNCKKG KRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 69 | 320 | 266 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-73 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-80 | 129 | 324 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB59066.1 | 0 | 21 | 403 | 27 | 409 | pectate lyase [Salix gilgiana] |
| EMBL | CBI14899.1 | 0 | 17 | 403 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002275781.1 | 0 | 17 | 403 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002285340.1 | 0 | 21 | 403 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322215.1 | 0 | 1 | 403 | 1 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 55 | 364 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 55 | 364 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 74 | 321 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000002 | 189 | 394 | 128 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000002 | 189 | 394 | 128 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
