| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01001104001 |
| Family | CE8 |
| Protein Properties | Length: 233 Molecular Weight: 25625 Isoelectric Point: 8.204 |
| Chromosome | Chromosome/Scaffold: 1 Start: 22666634 End: 22667976 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 139 | 220 | 1.7e-23 |
| GPTYLGRAYGAYSRVLFYKSTLSGSVDPKGWDPWNFVGHENQLTYAEVDCRGDGANTSQRVSWEKTLSPSELKSLISTSFID | |||
| CE8 | 27 | 134 | 1.3e-30 |
| RENVTVPRDKPYVYLKGHQRSTTIVAGRSSGNLWEATLMNTFNVAGSILGNDVKPAVAVSVQGDKNSFYRCAFIGLQDTLFDAIGRHFFRSCYIEGAVDF IFGDGTSM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 233 Download |
| MRKCNYLVPL HILHVAKLIG PWVHACRENV TVPRDKPYVY LKGHQRSTTI VAGRSSGNLW 60 EATLMNTFNV AGSILGNDVK PAVAVSVQGD KNSFYRCAFI GLQDTLFDAI GRHFFRSCYI 120 EGAVDFIFGD GTSMVIGTGP TYLGRAYGAY SRVLFYKSTL SGSVDPKGWD PWNFVGHENQ 180 LTYAEVDCRG DGANTSQRVS WEKTLSPSEL KSLISTSFID NEGWLANQPL SA* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02682 | PLN02682 | 1.0e-47 | 27 | 227 | 260 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 1.0e-49 | 12 | 225 | 267 | + Probable pectinesterase | ||
| PLN02176 | PLN02176 | 1.0e-53 | 27 | 230 | 261 | + putative pectinesterase | ||
| PLN02432 | PLN02432 | 9.0e-55 | 27 | 225 | 250 | + putative pectinesterase | ||
| PLN02497 | PLN02497 | 1.0e-72 | 27 | 230 | 260 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29271.1 | 0 | 1 | 232 | 1 | 232 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI40838.1 | 0 | 27 | 229 | 83 | 341 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263748.1 | 0 | 27 | 229 | 70 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002268029.1 | 0 | 19 | 232 | 63 | 322 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002275096.1 | 0 | 19 | 229 | 220 | 469 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-25 | 27 | 225 | 47 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-16 | 27 | 225 | 43 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.000000003 | 82 | 134 | 132 | 184 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 0.000000003 | 82 | 134 | 132 | 184 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 0.000000003 | 82 | 134 | 132 | 184 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
