| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01001327001 |
| Family | CE8 |
| Protein Properties | Length: 350 Molecular Weight: 38793.7 Isoelectric Point: 8.1998 |
| Chromosome | Chromosome/Scaffold: 2 Start: 5378526 End: 5380976 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 48 | 339 | 0 |
| ITVDARGTGDFLSVQAAVDAVPDNNTKNVLIKINAGCYVEKVVVPVTKPYITFQGDGRDETMIEWHDRASDRGTNGQQLRTYRTASVIVFANYFSARNIS FKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFA FVGCKVTGRGPLYVGRAMGQFSRIVYSYTYFDDVVAHGGWDDWDHTSNKNKTVFFGVYKCWGPGAEAVRGVTWARELDFETAHPFLVKSFVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 350 Download |
| MAPFTSFFSI LTLFLCYAPL KYSATIIPST NSTKRHHKWV GPSGHLFITV DARGTGDFLS 60 VQAAVDAVPD NNTKNVLIKI NAGCYVEKVV VPVTKPYITF QGDGRDETMI EWHDRASDRG 120 TNGQQLRTYR TASVIVFANY FSARNISFKN TAPAPMPGMQ GWQAAAFRIS GDKAYFSGCG 180 FYGAQDTLCD DAGRHYFKEC YIEGSIDFIF GNGRSMYKDC ELHSIATRFG SIAAQDRNSP 240 DEKTGFAFVG CKVTGRGPLY VGRAMGQFSR IVYSYTYFDD VVAHGGWDDW DHTSNKNKTV 300 FFGVYKCWGP GAEAVRGVTW ARELDFETAH PFLVKSFVNG RHWIAPSDA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 5.0e-104 | 48 | 346 | 301 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 7.0e-107 | 47 | 349 | 312 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 1.0e-114 | 48 | 344 | 299 | + pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-134 | 48 | 346 | 300 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 0 | 22 | 349 | 328 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD65006.1 | 0 | 28 | 349 | 19 | 344 | pectinesterase family protein [Brassica oleracea] |
| EMBL | CBI31927.1 | 0 | 1 | 349 | 1 | 349 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_199561.1 | 0 | 7 | 349 | 11 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266321.1 | 0 | 20 | 349 | 27 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002303355.1 | 0 | 33 | 346 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 3.9937e-43 | 40 | 344 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-34 | 54 | 344 | 11 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-17 | 57 | 254 | 43 | 239 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 6e-16 | 58 | 224 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 6e-16 | 58 | 224 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
