| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01002584001 |
| Family | CBM43 |
| Protein Properties | Length: 411 Molecular Weight: 44448.1 Isoelectric Point: 4.6341 |
| Chromosome | Chromosome/Scaffold: Start: 35315559 End: 35319027 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 290 | 369 | 4.1e-26 |
| WCVANPSRDLSGVANHMKIACSNADCTTLNYGGSCNEIGAKGNISYAFNSYYQVKKQNSQSCDFDGLGIVTFLDPSVGDC | |||
| GH17 | 1 | 269 | 0 |
| MVGIPNEMLSVFSSSTDACDLWVSQNLSRYMGKGGVDIRYVAVGNEPFLTSYSGQFQSYVVPALLNLQQSLAKANVANFVKLVVPCNADAYESSLPSQGA FRSELTQIMTQIVSFLNTNGSPFVVNIYPFLSLYGNSDFPQDYAFFGGTNHAVTDGANVYYNAFDGNFDTLVAALNKLGYGQMPIVIGEVGWPTDGAISA NLTAAKAFNQGLINHVLSNKGTPLRPGVPPMDIYLFSLLDEEAKSILPGTFERHWGIFSFDGQAKYPLN | |||
| Full Sequence |
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| Protein Sequence Length: 411 Download |
| MVGIPNEMLS VFSSSTDACD LWVSQNLSRY MGKGGVDIRY VAVGNEPFLT SYSGQFQSYV 60 VPALLNLQQS LAKANVANFV KLVVPCNADA YESSLPSQGA FRSELTQIMT QIVSFLNTNG 120 SPFVVNIYPF LSLYGNSDFP QDYAFFGGTN HAVTDGANVY YNAFDGNFDT LVAALNKLGY 180 GQMPIVIGEV GWPTDGAISA NLTAAKAFNQ GLINHVLSNK GTPLRPGVPP MDIYLFSLLD 240 EEAKSILPGT FERHWGIFSF DGQAKYPLNL GLGNGLLKNA RDVEYLPSRW CVANPSRDLS 300 GVANHMKIAC SNADCTTLNY GGSCNEIGAK GNISYAFNSY YQVKKQNSQS CDFDGLGIVT 360 FLDPSVGDCR FLVGITDSSS SNVEASGGQL YYESSCCLYV LHSPLFFFCF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0006 | 124 | 261 | 138 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 7.0e-17 | 289 | 358 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-28 | 290 | 371 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-60 | 1 | 267 | 269 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN82722.1 | 0 | 1 | 378 | 56 | 433 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI41064.1 | 0 | 1 | 410 | 1 | 410 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002271875.1 | 0 | 1 | 384 | 89 | 472 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002307845.1 | 0 | 1 | 381 | 1 | 381 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329964.1 | 0 | 1 | 381 | 79 | 459 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 1e-36 | 1 | 270 | 51 | 306 | A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I |
| PDB | 1aq0_B | 1e-36 | 1 | 270 | 51 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 1e-36 | 1 | 270 | 51 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 1e-36 | 1 | 270 | 52 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 1e-36 | 1 | 270 | 52 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG528587 | 293 | 33 | 325 | 0 |
| CB979213 | 273 | 120 | 392 | 0 |
| GT048566 | 325 | 48 | 372 | 0 |
| GT035243 | 353 | 28 | 380 | 0 |
| EE064316 | 252 | 98 | 349 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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