| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01003965001 |
| Family | GT92 |
| Protein Properties | Length: 1020 Molecular Weight: 115948 Isoelectric Point: 8.6029 |
| Chromosome | Chromosome/Scaffold: 14 Start: 26344028 End: 26355087 |
| Description | zinc finger (C3HC4-type RING finger) family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT92 | 308 | 516 | 3.3e-22 |
| MCICTMVRNQARFLREWIMYHAQIGVQRWFIYDNNSVDNIEKVLESLETANLNISRHLWPWIKTQEAGFAHCALRARDSCEWVGFIDVDEFLHLPSGASL QDVVWNQSRSANNNVAELRISCYSFGPSGLTSVPPKGVAVGYTCRLSAPERHKSIVRPEALNSTLINVVHHFHLRNGFDFVNVDRGAMVINHYKYQVWEV FKEKFYRRV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1020 Download |
| MIRGQPQMSL VGDSRATHIF RLLKTREWFS ASAMKERRKR DAGSWGRFFW CTFFVVFSCV 60 VVTGVTFSTF SIFGEKFRPV LVSSWRKQAM EAIAGESFIP PAISIRETVI FPDQELVFLK 120 YPPSARLFTK DDLDCLYFSP NSSDSHIKLP PEDVDGETRD HQIVRCPRRP RGFTLSLVLK 180 SNALLRPGPT HQWDSLVYEA LIDRDNTTVA FVKGLNLRPD RASDPTRFEC VYGWDFRKPR 240 FLLRSEVVSI AQEVVRCRTP LSILNNPQRL NSTIKVSVRM KGKGILNSIA EPKRRSPPDP 300 PIRKQHEMCI CTMVRNQARF LREWIMYHAQ IGVQRWFIYD NNSVDNIEKV LESLETANLN 360 ISRHLWPWIK TQEAGFAHCA LRARDSCEWV GFIDVDEFLH LPSGASLQDV VWNQSRSANN 420 NVAELRISCY SFGPSGLTSV PPKGVAVGYT CRLSAPERHK SIVRPEALNS TLINVVHHFH 480 LRNGFDFVNV DRGAMVINHY KYQVWEVFKE KFYRRVAAYV ADWQDEENVG SKDRAPGLGT 540 RAVEPPDWST RFCEVTDTGL RDRVLQIFKD PETHRMPWQE HQQDEEDSSI LIERDKQLRS 600 QRLYSGWLIV SFSNQKMVRQ ESKQSPEKQS ESVENDGSAE CVFSPRFKSV AALAGWDEEA 660 LLIASLVVED TPDRLVKHKK RSDLTFKTPP SNSRRKRRTQ RRSPASIPVT VLDLDEGENA 720 KEESEKKKIE TKTAEHEEKN VTGDKQQGAE SSAASCSAST STSVLPCMDR LREELSCAIC 780 LEICFEPSTT PCGHSFCKKC LRSAADKCGK RCSKCRQMMS NGRSCTVNTV LWNTIQLLFP 840 QEVEARKAAG ALNSREAKRQ SPEKEGQTIT RNRSVRPSSG VASRDASVRR RRGMPSQSED 900 AALALRLQRE EFMEAFREQP HEEQRNTVSV ARANLRAMAS RAVSLRVYTL PLSPLLIPSA 960 CSTYNWCILC PFLVLVKLAL ITCVAAEMEE GESSYVIYMW PTLDDETLAT TGNGLEFYF* 1020 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13923 | zf-C3HC4_2 | 1.0e-6 | 773 | 817 | 46 | + Zinc finger, C3HC4 type (RING finger). | ||
| smart00184 | RING | 4.0e-7 | 777 | 815 | 40 | + Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) | ||
| cd00162 | RING | 1.0e-8 | 777 | 817 | 42 | + RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | ||
| pfam13704 | Glyco_tranf_2_4 | 6.0e-11 | 315 | 404 | 93 | + Glycosyl transferase family 2. Members of this family of prokaryotic proteins include putative glucosyltransferases, | ||
| pfam01697 | Glyco_transf_92 | 5.0e-40 | 304 | 553 | 277 | + Glycosyltransferase family 92. Members of this family act as galactosyltransferases, belonging to glycosyltransferase family 92. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues. This is supported by the inclusion of this family in the GT-A glycosyl transferase superfamily. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI17696.1 | 0 | 1 | 1019 | 1 | 1019 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189369.1 | 0 | 76 | 943 | 45 | 909 | zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002270991.1 | 0 | 34 | 951 | 1 | 905 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300081.1 | 0 | 34 | 942 | 1 | 904 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526930.1 | 0 | 34 | 579 | 1 | 551 | ubiquitin-protein ligase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3l11_A | 0.000000003 | 774 | 849 | 15 | 96 | A Chain A, Crystal Structure Of The Ring Domain Of Rnf168 |
| PDB | 2ysj_A | 0.000008 | 768 | 815 | 14 | 63 | A Chain A, Solution Structure Of The Ring Domain (1-56) From Tripartite Motif-containing Protein 31 |
| PDB | 2ysl_A | 0.000009 | 768 | 816 | 14 | 64 | A Chain A, Solution Structure Of The Ring Domain (1-66) From Tripartite Motif-containing Protein 31 |
| PDB | 1z6u_B | 0.00005 | 768 | 846 | 72 | 150 | A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens] |
| PDB | 1z6u_A | 0.00005 | 768 | 846 | 72 | 150 | A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens] |
