| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01003984001 |
| Family | PL1 |
| Protein Properties | Length: 372 Molecular Weight: 40786 Isoelectric Point: 7.1924 |
| Chromosome | Chromosome/Scaffold: 14 Start: 26481801 End: 26483502 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 117 | 322 | 0 |
| IQDEPLWIIFKRDMVIKLKQELVMNSFKTIDGRGASVHIAGGPCITIHYASNIIIHGLHIHDCKQGGNANIRNSPHHSGWWTVSDGDGVSIFGGRHIWVD HCSLSNCHDGLIDAIHGSTAITISNNFMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 372 Download |
| MATFAMSLLF LFSLLPPILG SSAPVQDPEV VVQEVHRSIN ASRRNLGYFS CGTGNPIDDC 60 WRCDANWDKN RQRLADCAIG FGKDAMGGKN GRIYVVTDSE DDDPVNPRPG TLRHAVIQDE 120 PLWIIFKRDM VIKLKQELVM NSFKTIDGRG ASVHIAGGPC ITIHYASNII IHGLHIHDCK 180 QGGNANIRNS PHHSGWWTVS DGDGVSIFGG RHIWVDHCSL SNCHDGLIDA IHGSTAITIS 240 NNFMTHHDKV MLLGHSDSYT EDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 EMYAIGGSAD PTINSQGNRF LAPNDRFKKA VTKHEDAPES EASSLSARPS SLVGSITLGS 360 GALGCRKGSR C* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-28 | 127 | 320 | 218 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-74 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-79 | 129 | 324 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63756.1 | 0 | 18 | 371 | 13 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 17 | 371 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI17713.1 | 0 | 1 | 371 | 1 | 371 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268976.1 | 0 | 1 | 371 | 1 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300069.1 | 0 | 1 | 371 | 1 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 55 | 333 | 2 | 281 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 55 | 333 | 2 | 281 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-19 | 74 | 321 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000000001 | 145 | 297 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 1pe9_B | 0.000000000000001 | 133 | 330 | 78 | 297 | A Chain A, Bacillus Subtilis Pectate Lyase |
