| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01004006001 |
| Family | GH28 |
| Protein Properties | Length: 391 Molecular Weight: 41315 Isoelectric Point: 8.8129 |
| Chromosome | Chromosome/Scaffold: Start: 14265823 End: 14269339 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 45 | 379 | 0 |
| WAAACASTASSIIFVPKGRYLLHPAVFSGRYCTSARITILINGTLVAPADYRILGKANNWLSFEGVSGVSILGGAFDAKGPALWACKAAGNQHCPSGATT LSFTNSNNIMIKGMLSLNSQMFHIVINGCSNVRLQGVNIIASGNSPNTDGIHVQRSTNIAIIRSTIRTGDDCISIGPGTKNLWMEGIECGPGHGISIGSL AKDLEEEGVQNVTVKNAAFTGTQNGLRIKSWARASTGFVKGVHFEGVTMDNVQSPIVIDQNYCPHNQGCPSQESGVKVSDVTYKGIRGTSATKVAVKFDC SAANPCTSLRLEDVKLTYTNEDQVAQASCSNANGK | |||
| Full Sequence |
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| Protein Sequence Length: 391 Download |
| MDGRNYTFIA KFIVKIKVRA VYDVKSFGAK PDGLSDSTKA FLNAWAAACA STASSIIFVP 60 KGRYLLHPAV FSGRYCTSAR ITILINGTLV APADYRILGK ANNWLSFEGV SGVSILGGAF 120 DAKGPALWAC KAAGNQHCPS GATTLSFTNS NNIMIKGMLS LNSQMFHIVI NGCSNVRLQG 180 VNIIASGNSP NTDGIHVQRS TNIAIIRSTI RTGDDCISIG PGTKNLWMEG IECGPGHGIS 240 IGSLAKDLEE EGVQNVTVKN AAFTGTQNGL RIKSWARAST GFVKGVHFEG VTMDNVQSPI 300 VIDQNYCPHN QGCPSQESGV KVSDVTYKGI RGTSATKVAV KFDCSAANPC TSLRLEDVKL 360 TYTNEDQVAQ ASCSNANGKA YGLVQPNSCL * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-82 | 24 | 386 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-86 | 21 | 390 | 376 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-90 | 57 | 376 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-98 | 13 | 389 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-138 | 6 | 390 | 385 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 1 | 390 | 1 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262690.1 | 0 | 8 | 390 | 10 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002262719.1 | 0 | 21 | 390 | 30 | 401 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276729.1 | 0 | 21 | 390 | 30 | 401 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 19 | 390 | 29 | 397 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-23 | 145 | 361 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-19 | 47 | 361 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-19 | 47 | 361 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-19 | 47 | 361 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-19 | 47 | 361 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JZ191937 | 302 | 89 | 390 | 0 |
| JZ194028 | 289 | 85 | 373 | 0 |
| JZ192826 | 289 | 87 | 375 | 0 |
| DY281549 | 316 | 22 | 337 | 0 |
| JZ192324 | 276 | 90 | 365 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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