| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01005974001 |
| Family | PL1 |
| Protein Properties | Length: 332 Molecular Weight: 37066.9 Isoelectric Point: 6.4292 |
| Chromosome | Chromosome/Scaffold: Start: 23065893 End: 23068693 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 62 | 240 | 0 |
| VFEISGTINLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLHDYDDGLIDITRQSTDITVSRC YFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWSVYAVCASVESQIYSQNNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 332 Download |
| MASLPYADVD SNLRDLAGKA EGFGRLAVGG LHGPIYSVTT LADDGPGSLR EGCRRQEPLW 60 IVFEISGTIN LSSYLSVSSY KTIDGRGQRI KFTGKGLRLK ECEHIIICNL EFEGGRGHDV 120 DGIQIKPNSR HIWIDRCSLH DYDDGLIDIT RQSTDITVSR CYFSQHDKTM LIGADPSHIG 180 DRCIRVTIHH CFFDGTRQRQ PRVRFGKVHL YNNYTRNWSV YAVCASVESQ IYSQNNIYEA 240 GEKKVAFKYY TEMAADMEEA KSGLIRSEGD LFLSGAQSCL LTGIGEECIF HPSEYYPTWT 300 IELASDSLKN VLQVCTGWQA IPRPAELMTS A* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 4.0e-40 | 62 | 236 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-47 | 18 | 311 | 320 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-67 | 68 | 241 | 188 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN61854.1 | 0 | 1 | 331 | 1 | 331 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_191074.2 | 0 | 1 | 326 | 1 | 326 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002276049.1 | 0 | 1 | 331 | 1 | 331 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311134.1 | 0 | 1 | 327 | 1 | 327 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 9.99967e-42 | 10 | 311 | 15 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 9.99967e-42 | 10 | 311 | 15 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-27 | 1 | 238 | 9 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-26 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 3e-22 | 82 | 239 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY275282 | 332 | 1 | 330 | 0 |
| JG177860 | 306 | 21 | 326 | 0 |
| DY277275 | 310 | 4 | 313 | 0 |
| DW066041 | 301 | 25 | 325 | 0 |
| DY277275 | 26 | 305 | 330 | 0.002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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