| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01006302001 |
| Family | PL4 |
| Protein Properties | Length: 753 Molecular Weight: 85281.8 Isoelectric Point: 8.4199 |
| Chromosome | Chromosome/Scaffold: Start: 24748934 End: 24752897 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 3 | 239 | 0 |
| QVVMDNGIIQLTLAKPEGSVVGIKYKGVENLLSHRYKESSRGYICIGIAFGKKMDNGFLGNSFRVINQNESQVEVSFKRPWDPSDDSGPRLSVDKRFIML RGSSGFYAYAIYERLQGWHGTSLWQTRLVFKLQEDLFDYMAISDTRQRVMPTAEDRARGKPLAYPEAVLLTNPSNPDLKGEVDDKYQYASDSKDNKVHGW ISQKSGVGFWIITPSDEFRISGPLKQELTSHAGPVSL | |||
| PL4 | 272 | 736 | 0 |
| TSRFDYMAISDTRQRVMPTAEDRARGKPLAYPEAVLLTNPSNPDLKGEVDDKYQYASDSKDNKVHGWISQKSGVGFWIITPSDEFRISGPLKQELTSHAG PVSLSVFTSSHYVGKPEEEIFKDGEAWKKVFGPIFIYLNSVSNKKEALSLWNDAKQQMLKEVDSWPYSFPLSQDFPKSHQRGSVEGRLLVLDKYINQTPT PASLAYVGLSLPGEAGSWQTETKGYQFWTQADKEGNFSIRAVRAGTYNLFAWVPGIMGDYKYDAIITIKPGLKIKLGNIVFEPPRHGPTLWEIGIPDRTA AEFFVPDVDPKFNNKLYVKQDKFRQYGLWDRYADIYPNQDLVYTVGKSDYRKDWFFAHVNRHVTDDTFLGTTWQIVFDLPVVDMAATYKFQLVLAGASLA QLQVRLNDPNATRPLLSTKLIGRENLIARHGIHGLLRSYTADIPGFLFVEGCNTIYLTQTRASNS | |||
| Full Sequence |
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| Protein Sequence Length: 753 Download |
| MFQVVMDNGI IQLTLAKPEG SVVGIKYKGV ENLLSHRYKE SSRGYICIGI AFGKKMDNGF 60 LGNSFRVINQ NESQVEVSFK RPWDPSDDSG PRLSVDKRFI MLRGSSGFYA YAIYERLQGW 120 HGTSLWQTRL VFKLQEDLFD YMAISDTRQR VMPTAEDRAR GKPLAYPEAV LLTNPSNPDL 180 KGEVDDKYQY ASDSKDNKVH GWISQKSGVG FWIITPSDEF RISGPLKQEL TSHAGPVSLS 240 NSSRLVLCCY PLFFSFFGYS FYLPSFLTHQ FTSRFDYMAI SDTRQRVMPT AEDRARGKPL 300 AYPEAVLLTN PSNPDLKGEV DDKYQYASDS KDNKVHGWIS QKSGVGFWII TPSDEFRISG 360 PLKQELTSHA GPVSLSVFTS SHYVGKPEEE IFKDGEAWKK VFGPIFIYLN SVSNKKEALS 420 LWNDAKQQML KEVDSWPYSF PLSQDFPKSH QRGSVEGRLL VLDKYINQTP TPASLAYVGL 480 SLPGEAGSWQ TETKGYQFWT QADKEGNFSI RAVRAGTYNL FAWVPGIMGD YKYDAIITIK 540 PGLKIKLGNI VFEPPRHGPT LWEIGIPDRT AAEFFVPDVD PKFNNKLYVK QDKFRQYGLW 600 DRYADIYPNQ DLVYTVGKSD YRKDWFFAHV NRHVTDDTFL GTTWQIVFDL PVVDMAATYK 660 FQLVLAGASL AQLQVRLNDP NATRPLLSTK LIGRENLIAR HGIHGLLRSY TADIPGFLFV 720 EGCNTIYLTQ TRASNSFQGV MYDYIRLEGP PQ* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06045 | Rhamnogal_lyase | 6.0e-18 | 272 | 320 | 51 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10320 | RGL4_N | 2.0e-41 | 272 | 418 | 147 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-42 | 562 | 748 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 5.0e-49 | 3 | 240 | 243 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-73 | 1 | 184 | 188 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI33193.1 | 0 | 1 | 752 | 1 | 752 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI33217.1 | 3e-16 | 200 | 240 | 1 | 41 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI33217.1 | 0 | 336 | 752 | 1 | 378 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002264484.1 | 0 | 6 | 240 | 1 | 220 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264484.1 | 0 | 275 | 752 | 119 | 596 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW864372 | 303 | 274 | 574 | 0 |
| DY969340 | 321 | 350 | 668 | 0 |
| DY922281 | 277 | 392 | 666 | 0 |
| GW864372 | 113 | 130 | 240 | 5.99994e-41 |
| DY969340 | 27 | 214 | 240 | 0.04 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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