| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01006443001 |
| Family | GH28 |
| Protein Properties | Length: 884 Molecular Weight: 98379 Isoelectric Point: 7.968 |
| Chromosome | Chromosome/Scaffold: Start: 26030465 End: 26037136 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 714 | 870 | 0 |
| VGPGATNLWIENVACGPGHGISIGSLGKDLKEEGVQNVTVKTVTFTGSQNGVRIKSWARASNGFVKRVVFQHILMVNVQNPIVIDQNYCPGHKNCPGQVS GVKVSDVTYQDIHGTSASEVAMKFDCSSKNPCSGIKLEDVKLTYRNKAPESSCVNAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 884 Download |
| VDATSGVGAD AHSIVIIAQI HEINGQRLDL KKFKCHIDQV SIQLLRHYRK FYDSLLSLHF 60 TFNDIDDAAG LVLDMCRCRD SLSIRKDRNE SYKTCLGPIG SYHLREGLKI QIVPELLQKD 120 SVFKMDSKQE LVLFSNGKYV LSNKALVKLV IAYQGDGRIG ELSRLMLSLQ KELGTLEGGG 180 LISDVIDACI QLGWLETAHG ILDDMELAGA PIGSSTYMSL LTAYYKGKMA REAKALLKQM 240 RKAGFVVDLS DEMVMTTCLL GEKTILPVVY DSFITLPPST SPINSCSNRF NSSTPHHYLL 300 QLPTLYPYSQ LPILSFSFCL LLPYLPAMVQ YVSSSSLLLA AVLFMVLQPY WATAVTYNVV 360 NLGAKGDGHT DSTKAFLNAW AAACGSASPA TIYVPPGRYL LLNAVFRGCK NHAITFRIDA 420 TLVAPSDYRV IGNAANWLAF QDVTGVSIIG GVLDGQGTGL WACKXXXXXX XXXXXXXXXX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 600 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 660 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVGPGATN 720 LWIENVACGP GHGISIGSLG KDLKEEGVQN VTVKTVTFTG SQNGVRIKSW ARASNGFVKR 780 VVFQHILMVN VQNPIVIDQN YCPGHKNCPG QVSGVKVSDV TYQDIHGTSA SEVAMKFDCS 840 SKNPCSGIKL EDVKLTYRNK APESSCVNAG GMASGFVEPA SCL* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 7.0e-22 | 352 | 464 | 113 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-46 | 718 | 883 | 167 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-49 | 714 | 869 | 156 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 1.0e-69 | 714 | 883 | 171 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN61142.1 | 0 | 18 | 261 | 445 | 689 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN69520.1 | 0 | 24 | 261 | 15 | 251 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI29512.1 | 0 | 1 | 464 | 1 | 464 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI29512.1 | 0 | 714 | 883 | 714 | 883 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268843.1 | 0 | 6 | 261 | 214 | 468 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.00000000002 | 720 | 874 | 211 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.00000000002 | 720 | 874 | 211 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1hg8_A | 0.000000001 | 718 | 866 | 196 | 340 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 0.000000002 | 729 | 856 | 248 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.00000004 | 718 | 874 | 184 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC946744 | 171 | 714 | 884 | 0 |
| EE255801 | 171 | 714 | 884 | 0 |
| GW620205 | 169 | 716 | 884 | 0 |
| JZ196382 | 171 | 714 | 884 | 0 |
| FG510212 | 170 | 714 | 883 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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