| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01007582001 |
| Family | PL1 |
| Protein Properties | Length: 404 Molecular Weight: 44091.5 Isoelectric Point: 6.9692 |
| Chromosome | Chromosome/Scaffold: 17 Start: 11674724 End: 11676881 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 123 | 322 | 0 |
| WIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLNIHDCKQGGNTNVRDSPSHYGFRTISDGDGVSIFGGSHIWVDHCSLSN CHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MASSSLSLFF LFSLLSPILI ASSPVQDPEL VIQEVHRSIN ESRRNLGYLS CGSGNPIDDC 60 WRCNANWEKN RQSLADCAIG FGKNAIGGKN GKIYVVTDSS DDDVVNPKPG TLRYAVIQDE 120 PLWIIFARDM VIKLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQFVTNII IHGLNIHDCK 180 QGGNTNVRDS PSHYGFRTIS DGDGVSIFGG SHIWVDHCSL SNCHDGLIDA IHGSTAITIS 240 NNYMTHHDKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 EMYAIGGSAD PTINSQGNRF LAPNDRFSKE VTKHEDAPES QWKNWNWRSE GDLMLNGAYF 360 TPSGAGASSS YARASSLGAR PSSLVASITG SAGALSCKKG SRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-28 | 142 | 320 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-73 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-81 | 129 | 324 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU21247.1 | 0 | 16 | 403 | 17 | 406 | unknown [Glycine max] |
| EMBL | CAN76500.1 | 0 | 17 | 403 | 17 | 403 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 17 | 403 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002275781.1 | 0 | 17 | 403 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002285340.1 | 0 | 21 | 403 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 55 | 396 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 55 | 396 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 9e-18 | 73 | 321 | 1 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 9e-16 | 203 | 297 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 1pe9_B | 0.000000000000001 | 209 | 394 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
