| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01008053001 |
| Family | PL1 |
| Protein Properties | Length: 399 Molecular Weight: 44409.6 Isoelectric Point: 7.7842 |
| Chromosome | Chromosome/Scaffold: 17 Start: 6215992 End: 6217587 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 156 | 318 | 1.4013e-45 |
| IIFAHSMAIRLNEELIMTSNKTIDARGANVHIANGAGLTLHDGDGISIFGATNIWIDHISMSNCADGLIDAIMASTAITISNCHFTHHNEVMLFGASDGY SGDAIMQITITFNHFGQGLTQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHHPTILSQGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MEAVNMRLVI LIPFLVIVPA VTANIGDFDE VWQTRAEEAR KAALQAYNPH PEKVTDNFNK 60 KVHKSFDSTN HTRRNLSKFS GLCMATNPID RCWRCRSDWA SNRMKLADCV LGFGQKTTGG 120 KGGKIYVVTD PSDNDMVNPK PGTLRHAAIQ EEPLWIIFAH SMAIRLNEEL IMTSNKTIDA 180 RGANVHIANG AGLTLHDGDG ISIFGATNIW IDHISMSNCA DGLIDAIMAS TAITISNCHF 240 THHNEVMLFG ASDGYSGDAI MQITITFNHF GQGLTQRMPR CRWGFFHVVN NDYTHWLMYA 300 IGGSHHPTIL SQGNRFIAPP DINCKEVTKR DYSPESVWKS WTWRSQGDLM MNGAFFVESG 360 DPNFDFSNKY VIRAKPGAFV TRLTRFSGAL SCREGMPC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 6.0e-21 | 24 | 76 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-23 | 174 | 316 | 175 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-55 | 168 | 316 | 200 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-66 | 169 | 320 | 181 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN77957.1 | 0 | 1 | 398 | 1 | 407 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN79927.1 | 0 | 16 | 398 | 19 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI15265.1 | 0 | 1 | 398 | 1 | 398 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 16 | 398 | 48 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272638.1 | 0 | 84 | 398 | 1 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 87 | 391 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 87 | 391 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000000000004 | 115 | 307 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000003 | 199 | 329 | 190 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.0000000004 | 199 | 316 | 134 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
