| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01008061001 |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 43149.8 Isoelectric Point: 6.2714 |
| Chromosome | Chromosome/Scaffold: 17 Start: 6154649 End: 6156718 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 376 | 0 |
| VCNSSASTPIFHIPGNKTFLLNPVFFQGPCRSTNIQFQIDGIITAESEPSNWKCTRNRCDKWIHFKRVDGLFINGSGIIDGNGKNWWSSGYINALEVTSS NKVQLTGLSFRNNPHMHVVFDSCDMVHISNVSIDAPGDSPNTDGIHLKESTHVNIEFCSIRTGDDCISIVDKCSNITIQNIECGPGHGISIGSMGQYGAY ETVENIYVSDVQFKGSLSGVRIKTWQGGKGHARKMVFKGITSLNTQYPIQIDQFYCPHAKCDEQADAVEISDISYIDIKGTSMRKTAVKLACSESVPCKN IFMQDINLSYQGTNASAYCKNVNGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MASRLEILFL VSLFSVLLTP LHCSVFDVTQ YGAIGNGSTD DSPAFMLAWT DVCNSSASTP 60 IFHIPGNKTF LLNPVFFQGP CRSTNIQFQI DGIITAESEP SNWKCTRNRC DKWIHFKRVD 120 GLFINGSGII DGNGKNWWSS GYINALEVTS SNKVQLTGLS FRNNPHMHVV FDSCDMVHIS 180 NVSIDAPGDS PNTDGIHLKE STHVNIEFCS IRTGDDCISI VDKCSNITIQ NIECGPGHGI 240 SIGSMGQYGA YETVENIYVS DVQFKGSLSG VRIKTWQGGK GHARKMVFKG ITSLNTQYPI 300 QIDQFYCPHA KCDEQADAVE ISDISYIDIK GTSMRKTAVK LACSESVPCK NIFMQDINLS 360 YQGTNASAYC KNVNGTSQGI MEPSVPCLYY QTS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-84 | 68 | 373 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-86 | 26 | 387 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-97 | 24 | 388 | 375 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 9.0e-98 | 26 | 377 | 354 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-105 | 25 | 393 | 382 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 24 | 388 | 34 | 406 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 1 | 393 | 1 | 393 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI15274.1 | 0 | 19 | 388 | 19 | 381 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267133.1 | 0 | 19 | 388 | 19 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267182.1 | 0 | 1 | 393 | 1 | 399 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-21 | 110 | 374 | 99 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-19 | 129 | 373 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-19 | 129 | 373 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-19 | 129 | 373 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-19 | 129 | 373 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
