| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01008062001 |
| Family | GH28 |
| Protein Properties | Length: 388 Molecular Weight: 42932 Isoelectric Point: 7.3822 |
| Chromosome | Chromosome/Scaffold: 17 Start: 6151295 End: 6153981 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 49 | 365 | 0 |
| WSDVCKASASPTFLVPGDRRFLINPVVFEGRCRSKKIKFKVDGTITAPSEPSKWKCINKQCHSWISFKHVDGLVISDCMYSLTNLQALVVARSNNVQLHD LSFKDNPHMHVVFHHCDGVKISHISIDAPEDSPNTDGIHLKETASVIIEHCTIGTGDDCISLVDGSTHIDMRHIKCGPGHGISIGSLGKFGLSETVEYIH VKDAQFTGTTNGVRIKTWQGGRGHARNMIFEKIRSSDSEYPIIIDQFYCDHTECHDKPNAVEIRNISYIDVKGTSKKETAVKIACSDTVPCRDIFIQNIN LIYDQSGKQASAYCKNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 388 Download |
| MAFPRSTCLL LLLASFLLTP LEGHTFNVMD YGAIGNGRTD DSEAFMKAWS DVCKASASPT 60 FLVPGDRRFL INPVVFEGRC RSKKIKFKVD GTITAPSEPS KWKCINKQCH SWISFKHVDG 120 LVISDCMYSL TNLQALVVAR SNNVQLHDLS FKDNPHMHVV FHHCDGVKIS HISIDAPEDS 180 PNTDGIHLKE TASVIIEHCT IGTGDDCISL VDGSTHIDMR HIKCGPGHGI SIGSLGKFGL 240 SETVEYIHVK DAQFTGTTNG VRIKTWQGGR GHARNMIFEK IRSSDSEYPI IIDQFYCDHT 300 ECHDKPNAVE IRNISYIDVK GTSKKETAVK IACSDTVPCR DIFIQNINLI YDQSGKQASA 360 YCKNVINGYY HGVVRPNISC LQNDKLP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-81 | 25 | 379 | 377 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-89 | 24 | 382 | 375 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-89 | 23 | 365 | 350 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-90 | 24 | 369 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-95 | 26 | 362 | 358 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 22 | 385 | 32 | 410 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 1 | 381 | 1 | 388 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI15274.1 | 0 | 1 | 387 | 1 | 387 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267133.1 | 0 | 1 | 387 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267182.1 | 0 | 1 | 381 | 1 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-20 | 138 | 354 | 156 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000003 | 145 | 368 | 107 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 145 | 368 | 107 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 145 | 368 | 107 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 145 | 368 | 107 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
