| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01008905001 |
| Family | GT51 |
| Protein Properties | Length: 377 Molecular Weight: 42714.6 Isoelectric Point: 9.5253 |
| Chromosome | Chromosome/Scaffold: 18 Start: 3298909 End: 3306668 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT51 | 120 | 278 | 0 |
| EARVSAYPSHLWKAIVAYEDRRFFSHFGVDPVGIARAALSLSALGGGSTITQQLVKNTCLKNERTFSRKIVEMVLALALERTISKWRILSLYMSKIYWGH GIYGVESASIFYFGKHPSLLCLGESALLAGIIPAPELRSPFRDCSRGKTFQARVLKRMV | |||
| Full Sequence |
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| Protein Sequence Length: 377 Download |
| MNCTASNHLL FTTSPNLTLR GDRSPKQLLF FFCKIPTPSP NGNIPQTYHT RQNSVCGRVH 60 SPHFCSSQDP IEKKTHAITE IFVLFVFSLT LLCIRLLSNA LLPDFPQRWR SLVAFSEEAE 120 ARVSAYPSHL WKAIVAYEDR RFFSHFGVDP VGIARAALSL SALGGGSTIT QQLVKNTCLK 180 NERTFSRKIV EMVLALALER TISKWRILSL YMSKIYWGHG IYGVESASIF YFGKHPSLLC 240 LGESALLAGI IPAPELRSPF RDCSRGKTFQ ARVLKRMVEF GFLDVETALL AVKQSLQPRI 300 NCPEYSDGIL LQLSLPNKGL YWASKGKQGH VQLPIMEIWD WEKESKVWEV MEEMENWACR 360 LSELKNNNFR LKLNGR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02073 | PBP_1c | 6.0e-33 | 127 | 296 | 174 | + penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. | ||
| COG5009 | MrcA | 1.0e-50 | 127 | 307 | 185 | + Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane] | ||
| COG0744 | MrcB | 4.0e-55 | 127 | 299 | 178 | + Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane] | ||
| TIGR02074 | PBP_1a_fam | 1.0e-58 | 127 | 297 | 175 | + penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. | ||
| pfam00912 | Transgly | 4.0e-67 | 99 | 278 | 184 | + Transglycosylase. The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerisation of murein glycan chains. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0009252 | peptidoglycan biosynthetic process |
| GO:0009274 | peptidoglycan-based cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN72729.1 | 0 | 1 | 141 | 1 | 141 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN72729.1 | 0 | 173 | 376 | 900 | 1114 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI19051.1 | 0 | 1 | 376 | 1 | 376 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_001771453.1 | 0 | 127 | 308 | 208 | 389 | penicillin-binding protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002284416.1 | 0 | 1 | 173 | 1 | 173 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3nb6_A | 3e-37 | 123 | 294 | 25 | 200 | A Chain A, Crystal Structure Of Aquifex Aeolicus Peptidoglycan Glycosyltransferase In Complex With Methylphosphoryl Neryl Moenomycin |
| PDB | 3nb7_A | 3e-37 | 123 | 294 | 25 | 200 | A Chain A, Crystal Structure Of Aquifex Aeolicus Peptidoglycan Glycosyltransferase In Complex With Methylphosphoryl Neryl Moenomycin |
| PDB | 3d3h_A | 3e-37 | 123 | 294 | 25 | 200 | A Chain A, Crystal Structure Of Aquifex Aeolicus Peptidoglycan Glycosyltransferase In Complex With Methylphosphoryl Neryl Moenomycin |
| PDB | 2oqo_A | 3e-37 | 123 | 294 | 25 | 200 | A Chain A, Crystal Structure Of A Peptidoglycan Glycosyltransferase From A Class A Pbp: Insight Into Bacterial Cell Wall Synthesis |
| PDB | 3ue1_B | 2e-25 | 127 | 303 | 48 | 226 | A Chain A, Crystal Structure Of A Peptidoglycan Glycosyltransferase From A Class A Pbp: Insight Into Bacterial Cell Wall Synthesis |
| Transmembrane Domains | ||||
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| Start | End | |||
| 81 | 103 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC926211 | 210 | 168 | 377 | 0 |
| FC064209 | 221 | 1 | 221 | 0 |
| DT557994 | 253 | 55 | 307 | 0 |
| FC056630 | 147 | 9 | 155 | 0 |
| EX301431 | 251 | 43 | 288 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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