| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01009272001 |
| Family | CBM22 |
| Protein Properties | Length: 912 Molecular Weight: 100710 Isoelectric Point: 6.8728 |
| Chromosome | Chromosome/Scaffold: 18 Start: 6852092 End: 6857755 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 233 | 369 | 7.2e-31 |
| NIILNPIFEDGVNNWSGRGCKILLHDSMGGGKIVPQSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVAAVVRIFGNNVTSADVRVTLWVQTPNLREQ YIGVANSQATDKDWIQLQGKFLLNASPSRVVIYLEGP | |||
| CBM22 | 60 | 198 | 4e-33 |
| NIILNHDFSRGLHSWNLNCCNGSVVSAESGFLEGISVKSGGNYAVITNRKECWQGLEQDITSRVSLGSTYSVSACVGVSGSLQGSAVVQATLKLEYQGSA TSYLFIGRTSVSREQWKKLEGTFSLSTMPDRVVFYLEGP | |||
| CBM22 | 404 | 545 | 3.80032e-42 |
| NTIQNSNLNDGSNGWFPLGSCTLSVATGSPRILPPMARDSLGAHNPLSGHYILVTNRTQTWMGPAQMITDRVKLYLTYQVSAWVRIGPGATAPQNVNVAL GVDSQWVNGGQANVSDDRWYEIGGSFRIEKQPLKVMVYVQGP | |||
| GH10 | 602 | 834 | 0 |
| RQTQNSFGFGSCVSRTNIDNEDFVDFFVKNFNWAVFGNELKWYWTESQQGNFNYRDADELLDLCKSHNMETRGHCIFWEVEGTVQPWVKSLNKNDLMTAV QNRLTGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDSSAALFVNDYHVEDGCDTRSSPEKYIEQVIDLQKQGAPVGGIGIQGHIDS PVGPIVCSALDKLGVLGLPIWFTELDLFMSRNN | |||
| Full Sequence |
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| Protein Sequence Length: 912 Download |
| MRRIWPCCFT RRVSNTHQKA EDIQRSIGTM ENPKEGNADH GVSEKQNEST IKSRDSLSSN 60 IILNHDFSRG LHSWNLNCCN GSVVSAESGF LEGISVKSGG NYAVITNRKE CWQGLEQDIT 120 SRVSLGSTYS VSACVGVSGS LQGSAVVQAT LKLEYQGSAT SYLFIGRTSV SREQWKKLEG 180 TFSLSTMPDR VVFYLEGPSP GLDLLIESVV IFCSSPTEEE SSSTRCAAAG DENIILNPIF 240 EDGVNNWSGR GCKILLHDSM GGGKIVPQSG KFFASATERT QSWNGIQQEI TGRVQRKLAY 300 EVAAVVRIFG NNVTSADVRV TLWVQTPNLR EQYIGVANSQ ATDKDWIQLQ GKFLLNASPS 360 RVVIYLEGPP PGTDILVNSL VVKHAEKIPP SPPPVIEDPA FGINTIQNSN LNDGSNGWFP 420 LGSCTLSVAT GSPRILPPMA RDSLGAHNPL SGHYILVTNR TQTWMGPAQM ITDRVKLYLT 480 YQVSAWVRIG PGATAPQNVN VALGVDSQWV NGGQANVSDD RWYEIGGSFR IEKQPLKVMV 540 YVQGPASGVD LMVAGLQIFP VDRHARFRHL KKETDKIRKR DVILNFSGSG TGTSIGTFVK 600 VRQTQNSFGF GSCVSRTNID NEDFVDFFVK NFNWAVFGNE LKWYWTESQQ GNFNYRDADE 660 LLDLCKSHNM ETRGHCIFWE VEGTVQPWVK SLNKNDLMTA VQNRLTGLLT RYKGKFRHYD 720 VNNEMLHGSF YQDRLGKDIR ANMFKTANQL DSSAALFVND YHVEDGCDTR SSPEKYIEQV 780 IDLQKQGAPV GGIGIQGHID SPVGPIVCSA LDKLGVLGLP IWFTELDLFM SRNNAHLVNA 840 EGEINETGWR YLALRKEWLS HAHGHIDEQG EFMFRGFHGS YVVEIGTGSK KISKTFVVDN 900 GESPLVVSIG L* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 9.0e-16 | 233 | 373 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 3.0e-19 | 59 | 200 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-31 | 600 | 828 | 242 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 1.0e-66 | 641 | 863 | 236 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-69 | 606 | 835 | 241 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19342.1 | 0 | 1 | 911 | 1 | 911 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002283550.1 | 0 | 1 | 911 | 1 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301133.1 | 0 | 21 | 911 | 125 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 60 | 553 | 2 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 232 | 558 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 1e-27 | 610 | 828 | 15 | 238 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1x_A | 2e-27 | 594 | 828 | 5 | 240 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1w_A | 2e-27 | 594 | 828 | 5 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 2e-27 | 594 | 828 | 5 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 8e-27 | 639 | 828 | 47 | 240 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 431 | 728 | 0 |
| GW865493 | 309 | 502 | 810 | 0 |
| HS077585 | 278 | 480 | 757 | 0 |
| EB442796 | 113 | 100 | 212 | 0.0000000007 |
| EB442796 | 128 | 255 | 382 | 0.00000008 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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