Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01011348001 |
Family | PL1 |
Protein Properties | Length: 469 Molecular Weight: 52649.4 Isoelectric Point: 9.6253 |
Chromosome | Chromosome/Scaffold: 14 Start: 28868694 End: 28870986 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 182 | 386 | 0 |
QKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIAYGCGITIQFVKNIIIHNLHIHDIVPAQGGMIRDSVDHYGLRTASDGDGVSIFGSSNVWVDH LSMSNCKDGLVDVIMASTAITISNCHFTNHNEVMLFGGSNNFQGDKIMQVTVAFNHYGRGLVQRMPRCRYGFVHVVNNDYTHWLMYAIGGSQNPTIISQG NRFIA |
Full Sequence |
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Protein Sequence Length: 469 Download |
MKMAIYPLPT SQVSKFVWTG PHQTHMIMKM GAYKFSSLLL LSFFAFAVLA PSIRAHIGEF 60 DEVWQKRAEE AQKAALEAYQ PNPEEVTNQF NKNVRKSMQG TNTTRRNLRS NNGPCMATNP 120 IDRCWRCKQD WAKNRKKLAD CVLGFGRRTT GGKDGEFYVV TDASDNDMID PKPGTLRHAV 180 IQKEPLWIIF ARDMIIRLKQ ELIMAGNKTI DGRGANVHIA YGCGITIQFV KNIIIHNLHI 240 HDIVPAQGGM IRDSVDHYGL RTASDGDGVS IFGSSNVWVD HLSMSNCKDG LVDVIMASTA 300 ITISNCHFTN HNEVMLFGGS NNFQGDKIMQ VTVAFNHYGR GLVQRMPRCR YGFVHVVNND 360 YTHWLMYAIG GSQNPTIISQ GNRFIAPPNM ACKEVTKRDY ASPDEWKSWT WISQGDLLQN 420 GAFFVQSGDP KKKHPFTRYD MIKAKPGTFV NRLTRFSGSL GCKVNQPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-21 | 56 | 99 | 44 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-23 | 149 | 384 | 250 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-62 | 199 | 384 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-72 | 193 | 388 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 30 | 468 | 1 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 1 | 468 | 1 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 30 | 468 | 1 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282500.1 | 0 | 98 | 468 | 1 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 43 | 468 | 2 | 429 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 119 | 458 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 119 | 458 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-19 | 149 | 375 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 202 | 384 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000001 | 197 | 384 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |