| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01011429001 |
| Family | GT5 |
| Protein Properties | Length: 789 Molecular Weight: 87534.8 Isoelectric Point: 5.7197 |
| Chromosome | Chromosome/Scaffold: 14 Start: 29579318 End: 29589823 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 315 | 781 | 0 |
| NIILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQETGVRKKYKVDGQDMEVTYFQAYIDGVDFVFIDSHMFRHIEKNIYGGNRM DILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSALVIHNIAHQGRGPVEDFSYTGLPEHYLDLFKLYDPV GGEHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHQIINENDWKLRGIVNGIDVKDWNPELDIYLESDGYVNYSLETLHTGKPQCKAALQKELGLP IREDVPLIGFIGRLDHQKGVDLIAEAVPWMVGQDVQLVIQHHDKIRGWVGFSVKMAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDT VQPFDPYNESGLGWTFDRAEANRLIHALGNCLLTYRQYKQSWEGLQRRGMMQDLSWDHAAQNYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 789 Download |
| MSNTSMASVG CVSFVTERAA SIWSGRDRRP RFSFPVYRLR MSPGCAISKD SIFGYSREDC 60 VRFSLCSRRQ VLGSRGVRAR GEGSVEGEDG DRLEDAFDAT IEKSKKVLAM QRDLLQQNGH 120 EDPKVGVEQD FDVGAASVSV TFNISIAERR KLVSSIKSSI INPEDNEVSY KGRDSSFPNM 180 DLTSTGDSGG DEDYNGGILS GNYVHSNADK VPAALSSATS RGFGEGEKEL GKDLSLENPS 240 LDLEAPKQLK DTSPKTVWSD PLPSFLSKSV ETASPKEEKQ EDFRELSSEE VNNEAAVSMG 300 EDVKPPPLAG TNVMNIILVA AECAPWSKTG GLGDVAGALP KALARRGHRV MVVAPRYGNY 360 AEAQETGVRK KYKVDGQDME VTYFQAYIDG VDFVFIDSHM FRHIEKNIYG GNRMDILKRM 420 VLFCKAAIEV PWHVPCGGVC YGDGNLVFIA NDWHTALLPV YLKAYYRDNG LMQYTRSALV 480 IHNIAHQGRG PVEDFSYTGL PEHYLDLFKL YDPVGGEHFN IFAAGLKTAD RVVTVSHGYA 540 WELKTSEGGW GLHQIINEND WKLRGIVNGI DVKDWNPELD IYLESDGYVN YSLETLHTGK 600 PQCKAALQKE LGLPIREDVP LIGFIGRLDH QKGVDLIAEA VPWMVGQDVQ LVIQHHDKIR 660 GWVGFSVKMA HRITAGADIL LMPSRFEPCG LNQLYAMNYG TIPVVHAVGG LRDTVQPFDP 720 YNESGLGWTF DRAEANRLIH ALGNCLLTYR QYKQSWEGLQ RRGMMQDLSW DHAAQNYEEV 780 LVAAKYQW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-74 | 314 | 785 | 515 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-128 | 314 | 779 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 1.0e-161 | 314 | 780 | 494 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 314 | 784 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 315 | 781 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF13168.1 | 0 | 6 | 788 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
| GenBank | ABV25894.1 | 0 | 6 | 788 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
| EMBL | CBI22230.1 | 0 | 1 | 788 | 1 | 788 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002278470.1 | 0 | 6 | 788 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002324061.1 | 0 | 6 | 788 | 1 | 742 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 314 | 782 | 10 | 509 | A Chain A, Crystal Structure Of N-Terminal Domain Of Human Galectin-8 |
| PDB | 3vue_A | 0 | 314 | 782 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 314 | 780 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 314 | 787 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 314 | 787 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 488 | 789 | 0 |
| HO777841 | 425 | 77 | 496 | 0 |
| HO781048 | 395 | 412 | 789 | 0 |
| HO445868 | 438 | 369 | 789 | 0 |
| HO781048 | 41 | 373 | 413 | 0.16 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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