CAZyme Information

Basic Information
SpeciesVitis vinifera
Cazyme IDGSVIVT01012043001
FamilyCBM49
Protein PropertiesLength: 616 Molecular Weight: 67994.7 Isoelectric Point: 6.6929
ChromosomeChromosome/Scaffold: 1 Start: 1887739 End: 1890871
Descriptionglycosyl hydrolase 9C1
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM495246024.4e-31
  EFIHFITNTWTIGRTTYYRHKVIIKNKSQKPITDLKLAIENLSGTLWGLNPCQEKNTYELPQWMKVLQPGSQSSFVYVQ
GH9294890
  NYGDAMEKSLMFFEAQRSGKLPVNQRVKWRGDSGLRDGLLQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWGAIDYRKEITGLNQMGDTLAAIKWGTDYF
  IKAHTEPDVLWGQVGDGDSDHYCWERAEDMTTPRNAYKLDPNHPGSDLAGETAAAMAAASMAFKLYNSSYSSLLLAHGKQLFSFADRFRGQYDDSIQCAR
  QYYTSSGYSDELLWAAAWLFRATGDEYYLKYVVDNAVSMGGTGWAVKEFSWDNKYAGVQILLSKVLMEGRGGAYASTLKKYQAKADFFACACLQKNDGYN
  VPLTPGGLVYLHEWNNMQYASSAAFLLAVYSDYLSAENAVLKCPDAQVQPYELLNFAKSQADYILGKNPKSMSYLVGYGQKYPVHAHHRGSSIASVAVLH
  STVGCVEGFESWYHRPEANPNVIYGGLVGGPDKNDGFSDDRSNYEQTEPTLSGGAPLVGLF
Full Sequence
Protein Sequence     Length: 616     Download
MERSFTHCLV LAIFLGLFAL EATAGASFNY GDAMEKSLMF FEAQRSGKLP VNQRVKWRGD    60
SGLRDGLLQG VDLVGGYYDA GDHVKFGLPM AFTVTMLSWG AIDYRKEITG LNQMGDTLAA    120
IKWGTDYFIK AHTEPDVLWG QVGDGDSDHY CWERAEDMTT PRNAYKLDPN HPGSDLAGET    180
AAAMAAASMA FKLYNSSYSS LLLAHGKQLF SFADRFRGQY DDSIQCARQY YTSSGYSDEL    240
LWAAAWLFRA TGDEYYLKYV VDNAVSMGGT GWAVKEFSWD NKYAGVQILL SKVLMEGRGG    300
AYASTLKKYQ AKADFFACAC LQKNDGYNVP LTPGGLVYLH EWNNMQYASS AAFLLAVYSD    360
YLSAENAVLK CPDAQVQPYE LLNFAKSQAD YILGKNPKSM SYLVGYGQKY PVHAHHRGSS    420
IASVAVLHST VGCVEGFESW YHRPEANPNV IYGGLVGGPD KNDGFSDDRS NYEQTEPTLS    480
GGAPLVGLFS KLQSLIGTSG SHSQKSPAPH HQNTPIIYAD VPVEFIHFIT NTWTIGRTTY    540
YRHKVIIKNK SQKPITDLKL AIENLSGTLW GLNPCQEKNT YELPQWMKVL QPGSQSSFVY    600
VQGGPQAKVS VLSYH* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
PLN02340PLN02340010615607+
PLN02171PLN02171011614623+
PLN02420PLN02420023492472+
PLN00119PLN0011909492485+
pfam00759Glyco_hydro_9029490465+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005576extracellular region
GO:0005975carbohydrate metabolic process
GO:0030246carbohydrate binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBI27137.1016151615unnamed protein product [Vitis vinifera]
RefSeqNP_175323.102861529627AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds
RefSeqXP_002277177.10346151575PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002310080.102161519611glycosyl hydrolase family 9 [Populus trichocarpa]
RefSeqXP_002527135.1036152620endo-1,4-beta-glucanase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1ksd_A0274962429A Chain A, The Crystal Structure Of Este1, A New Thermophilic And Thermostable Carboxylesterase Cloned From A Metagenomic Library
PDB1ksc_A0274962429A Chain A, The Crystal Structure Of Este1, A New Thermophilic And Thermostable Carboxylesterase Cloned From A Metagenomic Library
PDB1ks8_A0274962429A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5.
PDB4tf4_B0275543490A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5.
PDB4tf4_A0275543490A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5.
Transmembrane Domains
StartEnd
931
Signal Peptide
Cleavage Site
25
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DY9681622871754610
HO783495376334070
CF9215552492695150
EL9341512352835160
EL934151315115414
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_002_01464.1.518.596Aquca_037_00141.1.542.619Aquca_013_00114.1.534.611
Arabidopsis lyrata474038.535.614489943.534.611892975.528.605
Arabidopsis thalianaAT1G64390.1.528.605AT1G48930.1.535.614AT4G11050.1.534.611
Brachypodium distachyonBradi2g32270.1.538.616Bradi2g07150.1.534.613
Brassica rapaBra032270.517.596Bra000732.268.345Bra027699.529.606Bra018765.532.611Bra027735.528.605
Carica papayaevm.model.supercontig_183.4.367.446evm.TU.contig_27379.2.529.606
Capsella rubellaCarubv10012624m.534.613Carubv10003874m.535.612Carubv10019981m.528.605
Citrus clementinaCiclev10019301m.537.614Ciclev10033912m.569.648
Citrus sinensisorange1.1g043219m.499.578orange1.1g019436m.249.326orange1.1g017562m.277.354orange1.1g011712m.387.464orange1.1g006835m.537.614
Cucumis sativusCucsa.107370.1.527.604Cucsa.128330.1.503.582Cucsa.303850.1.533.608
Eucalyptus grandisEucgr.D01733.1.529.606Eucgr.J00862.1.484.562Eucgr.E00858.1.526.602Eucgr.D01896.1
Fragaria vescamrna32087.1-v1.0-hybrid.632.709mrna11058.1-v1.0-hybrid.533.612
Glycine maxGlyma12g03050.1.537.616Glyma05g36930.1.532.609Glyma08g02610.1.533.610Glyma11g10760.1.535.614
Gossypium raimondiiGorai.003G080800.1.533.609Gorai.008G254000.1.534.611Gorai.004G133700.1.536.613Gorai.005G210200.1.530.608
Linum usitatissimumLus10003888.529.606Lus10010201.535.613Lus10032377.534.611Lus10017402.508.586Lus10001833.527.603
Lus10033956
Malus domesticaMDP0000276676.536.613MDP0000131267.528.605MDP0000548943MDP0000722052.313.390MDP0000826600.538.616
Manihot esculentacassava4.1_004404m.486.565cassava4.1_003698m.530.607
Medicago truncatulaMedtr4g074960.1.571.649
Mimulus guttatusmgv1a003302m.501.580
Oryza sativaLOC_Os01g12070.1.544.625LOC_Os01g12030.1.543.620LOC_Os04g57860.1.531.610LOC_Os05g12150.1.535.613
Panicum virgatumPavirv00000152m.548.625Pavirv00066185m.348.426Pavirv00000772m.535.612Pavirv00030375m.537.614Pavirv00029375m.528.607
Physcomitrella patensPp1s176_127V6.1.544.623
Phaseolus vulgarisPhvul.011G030300.1.567.645Phvul.002G297600.1.530.607
Picea abiesMA_895058g0010MA_10437098g0010.516.596MA_127108g0010.524.603MA_42717g0010.527.604MA_10241783g0010.543.621
MA_19509g0020.547.626
Populus trichocarpaPotri.003G139600.1.530.607Potri.001G092200.1.530.607Potri.001G092200.5.285.362Potri.007G071200.1.520.599Potri.007G071200.2.519.598
Potri.001G092200.4.375.452
Prunus persicappa002939m.528.605ppa022524m.499.578
Ricinus communis29675.m000388.528.607
Setaria italicaSi000642m.549.626Si021474m.530.607Si021476m.528.606
Selaginella moellendorffii234652.525.60399802.550.630
Sorghum bicolorSb09g006670.1.535.612Sb03g001560.1.561.639Sb06g032760.1.534.615
Thellungiella halophilaThhalv10023353m.527.604Thhalv10011318m.534.613Thhalv10028514m.535.612
Vitis viniferaGSVIVT01019523001.537.614GSVIVT01012043001.524.602
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)