| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01012232001 |
| Family | GH28 |
| Protein Properties | Length: 397 Molecular Weight: 43643.2 Isoelectric Point: 7.361 |
| Chromosome | Chromosome/Scaffold: 1 Start: 376807 End: 378298 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 384 | 0 |
| NEACHWKGTGVVLIPRGTYMVHPVKFQGPCSGRTMFLNTGEVLAPTDPALIHADNWIAFQEIDGLRVSGGGSFNGQGEKVWHNNVCHKNYNCKPLSSSLS FKFVTNGRIDHITSINSKMFHFNIYDNQKISINHVKILAPAESPNTDGIHIGRSNDIRITNSEIRTGDDCISLKQGSRDIHIQNVQCGPGHGISVGSLGK DEGEEEVRGITVRNCTFQGSDNGLRIKTWAASTRNIASDFTFEDIVVENVRNPINIDQEYCPHPPCNEGESQVEIKNVKFRNIRGTSSTKVAVSLICSSR IPCSDIELHNIDLVYHDQGGPATSSCRHVNG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 397 Download |
| MGLQVTFTRI FLLIILFVWV RDAQGQLKVF NVMNYGAIAN GHYDNSEALG RAWNEACHWK 60 GTGVVLIPRG TYMVHPVKFQ GPCSGRTMFL NTGEVLAPTD PALIHADNWI AFQEIDGLRV 120 SGGGSFNGQG EKVWHNNVCH KNYNCKPLSS SLSFKFVTNG RIDHITSINS KMFHFNIYDN 180 QKISINHVKI LAPAESPNTD GIHIGRSNDI RITNSEIRTG DDCISLKQGS RDIHIQNVQC 240 GPGHGISVGS LGKDEGEEEV RGITVRNCTF QGSDNGLRIK TWAASTRNIA SDFTFEDIVV 300 ENVRNPINID QEYCPHPPCN EGESQVEIKN VKFRNIRGTS STKVAVSLIC SSRIPCSDIE 360 LHNIDLVYHD QGGPATSSCR HVNGVSSGVQ RPPSCI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-84 | 31 | 392 | 368 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 5.0e-91 | 9 | 396 | 391 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-98 | 28 | 395 | 374 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-99 | 64 | 382 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-127 | 9 | 395 | 402 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 28 | 396 | 33 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 28 | 396 | 33 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Swiss-Prot | Q6H9K0 | 0 | 21 | 392 | 1 | 372 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
| RefSeq | XP_002273801.1 | 0 | 1 | 396 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314146.1 | 0 | 7 | 396 | 3 | 392 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 1e-17 | 126 | 381 | 81 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1rmg_A | 3e-17 | 24 | 384 | 15 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 8e-16 | 198 | 382 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 8e-16 | 198 | 382 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 8e-16 | 198 | 382 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
