| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01012679001 |
| Family | PL1 |
| Protein Properties | Length: 333 Molecular Weight: 36974.4 Isoelectric Point: 9.1252 |
| Chromosome | Chromosome/Scaffold: 10 Start: 603860 End: 605197 |
| Description | root hair specific 14 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 68 | 269 | 0 |
| LWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGLVRSTTMHVGHRLGSDGDAISIFTSSHVWIDHCYLA SCTDGLIDVIHASTAITISNNYFSHHDKVMLFGHDDHFTADKVMSVTVAFNHFGTGLVQRMPRVRFGYAHLANNKYDEWEMYAIGGSANPTILSEGNHFT AP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 333 Download |
| MNPIDSCWRR KANWASNRRA LADCAVGFGK GAMGGKYGAM YVVTTPSDDP VNPKPGTLRY 60 GVIQTKPLWI VFAKDMVITL KNELIMNSFK TIDGRGAKVE IAYGPCITIQ GVSHVIIHGI 120 SIHDCKPGKS GLVRSTTMHV GHRLGSDGDA ISIFTSSHVW IDHCYLASCT DGLIDVIHAS 180 TAITISNNYF SHHDKVMLFG HDDHFTADKV MSVTVAFNHF GTGLVQRMPR VRFGYAHLAN 240 NKYDEWEMYA IGGSANPTIL SEGNHFTAPD NANTKEVTKR EVKSGWKNWK WRSSKDKFVN 300 GAYFVHLDGE AVPRFTLDPK HFLLLMVQWF LL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-25 | 74 | 266 | 205 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-59 | 81 | 266 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-71 | 75 | 270 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23207.1 | 0 | 1 | 332 | 1 | 332 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_193939.1 | 0 | 1 | 323 | 46 | 375 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263615.1 | 0 | 1 | 316 | 50 | 366 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317128.1 | 0 | 1 | 316 | 46 | 351 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518442.1 | 0 | 1 | 316 | 43 | 359 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 305 | 2 | 310 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 305 | 2 | 310 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 7e-18 | 20 | 266 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 94 | 267 | 140 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.0000000000002 | 81 | 308 | 73 | 318 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG606120 | 308 | 2 | 306 | 0 |
| HO778688 | 306 | 2 | 304 | 0 |
| EL465440 | 295 | 14 | 305 | 0 |
| CK262438 | 297 | 12 | 305 | 0 |
| DT553691 | 275 | 8 | 281 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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