| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01012710001 |
| Family | PL4 |
| Protein Properties | Length: 619 Molecular Weight: 69934.4 Isoelectric Point: 7.9484 |
| Chromosome | Chromosome/Scaffold: 10 Start: 872795 End: 876237 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 1 | 598 | 0 |
| MLDNGLVKLTILRPQGFLTGIKYGGMDNLLDLKSSETNRGYWDINWSLPGGQDRYQLIKGDDYSVVHSSNESIEVSFRSTYDPSTSGIRLPLSIDLRYIL RAGVSGFYCYAIYELPPGCRAFDVAQTRMVFKLRQERFHYMAISDEKQRVMPMPEDLLQNRGKKLIVPESVLLVNPINPHLKGEVDDKYQYSMDNKDGGV HGWISSKPVVGFWVIFPSHEFRNGGPTKQNLTVHTGPACLAMFHGTHYIGEDIMAHFKDGETWRKVFGPFFVYLNSTPNISNAHNLWLDAKKQRLLEEAA WPYDFVSSPYYFTAKERGSVSGRLLVQDRFVSSSLVPAKYGYVGLSVATTEGSWQTESKGYQFWVQTDLNGNFTIKNVIPGAYGLHGWVPGFIGDYLDNA RITVSSGSQKQLGNLTYVPIRDGPTVWEIGFPDRTTIGFYVPDVNPMYANKLFLNSPEKFRQYGLWDRYTDLNPKSDQVFTIGVSDPKKDWFFAHVDRRG EANKYLPTQWEIKFNLDSVTSGIYKLRLAMASATRADLKVHINDMDVKHLVFQVQNLGMDNTVCRHGIHGLYRLYSIDISSSLLVKGDNSLFLTQARG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 619 Download |
| MLDNGLVKLT ILRPQGFLTG IKYGGMDNLL DLKSSETNRG YWDINWSLPG GQDRYQLIKG 60 DDYSVVHSSN ESIEVSFRST YDPSTSGIRL PLSIDLRYIL RAGVSGFYCY AIYELPPGCR 120 AFDVAQTRMV FKLRQERFHY MAISDEKQRV MPMPEDLLQN RGKKLIVPES VLLVNPINPH 180 LKGEVDDKYQ YSMDNKDGGV HGWISSKPVV GFWVIFPSHE FRNGGPTKQN LTVHTGPACL 240 AMFHGTHYIG EDIMAHFKDG ETWRKVFGPF FVYLNSTPNI SNAHNLWLDA KKQRLLEEAA 300 WPYDFVSSPY YFTAKERGSV SGRLLVQDRF VSSSLVPAKY GYVGLSVATT EGSWQTESKG 360 YQFWVQTDLN GNFTIKNVIP GAYGLHGWVP GFIGDYLDNA RITVSSGSQK QLGNLTYVPI 420 RDGPTVWEIG FPDRTTIGFY VPDVNPMYAN KLFLNSPEKF RQYGLWDRYT DLNPKSDQVF 480 TIGVSDPKKD WFFAHVDRRG EANKYLPTQW EIKFNLDSVT SGIYKLRLAM ASATRADLKV 540 HINDMDVKHL VFQVQNLGMD NTVCRHGIHG LYRLYSIDIS SSLLVKGDNS LFLTQARGGD 600 AICGVLYDYL RLEAPASS* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-29 | 316 | 415 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-48 | 427 | 613 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-62 | 1 | 277 | 284 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 7.0e-67 | 1 | 185 | 185 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23231.1 | 0 | 1 | 618 | 1 | 618 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_001769727.1 | 0 | 1 | 615 | 5 | 620 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002285626.1 | 0 | 2 | 617 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002317123.1 | 0 | 1 | 617 | 16 | 631 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527353.1 | 0 | 1 | 618 | 16 | 636 | lyase, putative [Ricinus communis] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GE473226 | 288 | 171 | 458 | 0 |
| GW864372 | 311 | 129 | 439 | 0 |
| CO473731 | 278 | 171 | 448 | 0 |
| DV995349 | 288 | 171 | 458 | 0 |
| DY969340 | 318 | 218 | 533 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
