| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01012723001 |
| Family | CBM53 |
| Protein Properties | Length: 1047 Molecular Weight: 119470 Isoelectric Point: 7.1562 |
| Chromosome | Chromosome/Scaffold: 10 Start: 977723 End: 999238 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 500 | 588 | 5.9e-34 |
| GSTVSVLYNPANTVLNGKSEVWFRCSFNRWTHRNGSLPPQKMLPVDNGSHLKATVKVPLDAYMMDFVFSEREDGGIFDNRNGMDYHIPV | |||
| CBM53 | 340 | 428 | 1.4e-34 |
| LVRLYYNRSSGPLAHANDIWIHGGHNNWKDGLSIVGSLIKDEKKEGDWWYVEVVVPERALVLDWVFADGPPQRASLYDNNHREDFHAIV | |||
| GT5 | 599 | 1042 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHHVDIILPKYDCLNLSNVKDFQYKRCYFWGGTEIKVWFGKVEGLSVYFLEPQNGFFSAGCIYGCRND GERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVSWLFKDHYKHYGLSKARVVFTIHNLEFGAPLIAKAMVYTDKATTVSHTYSREVSGNPAIAPHLYK FHGILNGIDLDIWDPYNDKFIPVPYISDNVVEGKRAAKEALQQRLGLKKSDFPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQAQGLEPNGFNFDGADPVGV DYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1047 Download |
| MEVALQAQRP VSCRALSDRE ANFKIKPFLG FFPNGRATQS SQHSWRREFP LSGVSNGIVA 60 SADFSRRRQR KVSMSGPRGP GPKGFLPKTP VETSTQKRDQ RNTGKNEDPS TPTSSEYSQK 120 IKPTAKSDTG HAKDGISLEE KNSGIIKSSA NEGNESIKFD GVRAEDVSLD LKLEMEANLH 180 KQVLEELAEE NFSRGNKMFY YPQVVKPDQD IEVFLNRSVS TLSNEPDVMI MGAFNDWRWK 240 SFTIQLNKTH LQGDWWSYIL LEEKRRELEK LAKEQAERER QAEEQRRIEA EKAAREADRA 300 QARAETERRR EMLQHLMKKG AVSVDNVWCI EPREFKGDDL VRLYYNRSSG PLAHANDIWI 360 HGGHNNWKDG LSIVGSLIKD EKKEGDWWYV EVVVPERALV LDWVFADGPP QRASLYDNNH 420 REDFHAIVPQ SISEELYWVE EEYQIYKKLQ EERWLREEAI RAKVERTARM KAEAKERTLK 480 MFLLSQKHIV YTEPLDVQAG STVSVLYNPA NTVLNGKSEV WFRCSFNRWT HRNGSLPPQK 540 MLPVDNGSHL KATVKVPLDA YMMDFVFSER EDGGIFDNRN GMDYHIPVFG SVVKEPPMHI 600 VHIAVEMAPI AKVGGLGDVV TSLSRAVQEL NHHVDIILPK YDCLNLSNVK DFQYKRCYFW 660 GGTEIKVWFG KVEGLSVYFL EPQNGFFSAG CIYGCRNDGE RFGFFCHAAL EFLLQSGFHP 720 DIIHCHDWSS APVSWLFKDH YKHYGLSKAR VVFTIHNLEF GAPLIAKAMV YTDKATTVSH 780 TYSREVSGNP AIAPHLYKFH GILNGIDLDI WDPYNDKFIP VPYISDNVVE GKRAAKEALQ 840 QRLGLKKSDF PLVGIITRLT HQKGIHLIKH AIWRTLERNG QVVLLGSAPD PRIQNDFVNL 900 ANQLHSSHGD RARLCLTYDE PLSHLIYAGA DFILVPSIFE PCGLTQLTAM RYGSIPVVRK 960 TGGLYDTVFD VDHDKERAQA QGLEPNGFNF DGADPVGVDY ALNRAISAWY DGRDWFNSLC 1020 KRVMEQDWSW NRPALDYMEL YHAARK* 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 2.0e-24 | 332 | 595 | 287 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 7.0e-76 | 72 | 257 | 203 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 0 | 312 | 1046 | 735 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 599 | 1042 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23240.1 | 0 | 1 | 1046 | 1 | 1046 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269011.1 | 0 | 1 | 257 | 1 | 306 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002269011.1 | 0.0005 | 202 | 435 | 426 | 689 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002269011.1 | 0 | 311 | 1046 | 405 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 598 | 1042 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 598 | 1042 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 598 | 1042 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 598 | 1042 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 598 | 1042 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 567 | 480 | 1046 | 0 |
| HO778003 | 521 | 313 | 833 | 0 |
| HO651392 | 413 | 635 | 1047 | 0 |
| HO778003 | 112 | 146 | 257 | 9e-29 |
| HO778003 | 281 | 330 | 588 | 0.000000000000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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