| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01013401001 |
| Family | CBM43 |
| Protein Properties | Length: 486 Molecular Weight: 52442 Isoelectric Point: 6.5031 |
| Chromosome | Chromosome/Scaffold: 18 Start: 691256 End: 696212 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 398 | 480 | 1e-30 |
| WCVAKPHADEKVLQAVLDFCCGPGGVDCREIYGSGDCFEPNKLHAHSSYAMNAYYQMHGRNYWNCDFKGAGLVTFGDPSYGRC | |||
| GH17 | 49 | 369 | 0 |
| VGVNYGTLGNNLPPPKKVAQLLQSTLIDKVKIYDTNPEILEAFSNTGIDLIVAVENYHVSNISSDVAAADEWFATRVAPFIPATSIVAIAVGNEYLTTDT DHLALNALVQAMQNLHGVLLARGLDRKIKVTTPHSMAVLASSFPPSASTFALELIPTMTSIVGFIADTGAPFMINAYPYFAYRDNPGKIDLEYALLGNTT GVRDPKGFVYNNMLDAQIDAVRSAINALGFGNRTIEITVSESGWPSKGEAGDSAATPENAKKYNTRLIERGQSDKGTPMRPKDKVEVFVFALFNENKKGG GVSERNFGILNGDGSKVYEID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MLLPLCHGHI NIPIYLPYIF LKSNLMAPTS LLLLPLLLLL CLFPAVSSVG VNYGTLGNNL 60 PPPKKVAQLL QSTLIDKVKI YDTNPEILEA FSNTGIDLIV AVENYHVSNI SSDVAAADEW 120 FATRVAPFIP ATSIVAIAVG NEYLTTDTDH LALNALVQAM QNLHGVLLAR GLDRKIKVTT 180 PHSMAVLASS FPPSASTFAL ELIPTMTSIV GFIADTGAPF MINAYPYFAY RDNPGKIDLE 240 YALLGNTTGV RDPKGFVYNN MLDAQIDAVR SAINALGFGN RTIEITVSES GWPSKGEAGD 300 SAATPENAKK YNTRLIERGQ SDKGTPMRPK DKVEVFVFAL FNENKKGGGV SERNFGILNG 360 DGSKVYEIDL SCKFCSGNGG AVGFGEKVAN AARGPSVWCV AKPHADEKVL QAVLDFCCGP 420 GGVDCREIYG SGDCFEPNKL HAHSSYAMNA YYQMHGRNYW NCDFKGAGLV TFGDPSYGRC 480 RYPQQ* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-7 | 77 | 361 | 292 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-19 | 398 | 468 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-35 | 398 | 482 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-90 | 49 | 369 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK24695.1 | 0 | 32 | 482 | 10 | 482 | unknown [Picea sitchensis] |
| EMBL | CBI40742.1 | 0 | 1 | 485 | 1 | 485 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272900.1 | 0 | 26 | 485 | 1 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300634.1 | 0 | 43 | 370 | 14 | 341 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002510704.1 | 0 | 43 | 485 | 17 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 49 | 370 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 49 | 370 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 49 | 370 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 49 | 370 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 49 | 370 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC919905 | 264 | 223 | 486 | 0 |
| ES808538 | 358 | 51 | 406 | 0 |
| EC922081 | 241 | 246 | 486 | 0 |
| ES850783 | 317 | 46 | 362 | 0 |
| ES818522 | 366 | 118 | 481 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
