| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01013771001 |
| Family | GH28 |
| Protein Properties | Length: 506 Molecular Weight: 54664.1 Isoelectric Point: 8.1151 |
| Chromosome | Chromosome/Scaffold: 1 Start: 7736722 End: 7740705 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 115 | 458 | 0 |
| SACKVEASTIVVPSEYVFLVGPISFSGPYCEANIVFQLDGTIIAPTNAKAWGSGLLWWIEFTKLRGITIRGNGVIDGKGSVWWQDSPFDDPVDDEAKLII PLNRTAKENSPIPINSKLGSKMPSTKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVSVYEMSVSSPGDSVNTDGIHLQNSKDVLIHATNLACGDD CVSIQTGCSNVYIHNVNCGPGHGISIGGLGRDGTKACVSNITVRDIIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKGKCKNQT SAVALSGITYEKIKGTYTVKPVHFACSDNLPCMDVTLTGIELKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 506 Download |
| MSGLSFRRLA FMLLFAFLVW SSSTGTCHAR RGKHWRHSRA ASASLSKKKA KSHGSGSHHH 60 GGSKSKPKAP SPPKQEVTPP PPEKKGSETF NVLDFGAKGD GDTDDTKAFQ SAWASACKVE 120 ASTIVVPSEY VFLVGPISFS GPYCEANIVF QLDGTIIAPT NAKAWGSGLL WWIEFTKLRG 180 ITIRGNGVID GKGSVWWQDS PFDDPVDDEA KLIIPLNRTA KENSPIPINS KLGSKMPSTK 240 PTALRFYGSF NVTVTGITIQ NSPQCHLKFD NCMGVSVYEM SVSSPGDSVN TDGIHLQNSK 300 DVLIHATNLA CGDDCVSIQT GCSNVYIHNV NCGPGHGISI GGLGRDGTKA CVSNITVRDI 360 IMHNTMNGVR IKTWQGGSGS VQGVLFSNIQ VSEVELPIVI DQFYCDKGKC KNQTSAVALS 420 GITYEKIKGT YTVKPVHFAC SDNLPCMDVT LTGIELKPLQ ERYHMYDPFC WQTFGELTTP 480 TVPPIDCLQI GKPSSNRIQS DHDSC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-54 | 83 | 457 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-55 | 88 | 456 | 374 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-62 | 111 | 457 | 352 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-70 | 121 | 456 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-75 | 112 | 484 | 377 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 505 | 4 | 516 | unknown [Populus trichocarpa] |
| EMBL | CAN65317.1 | 0 | 120 | 505 | 3 | 388 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266600.1 | 0 | 1 | 505 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 505 | 4 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 505 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-26 | 106 | 407 | 26 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-20 | 181 | 456 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-20 | 181 | 456 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-20 | 181 | 456 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-20 | 181 | 456 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
