Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01013772001 |
Family | GH28 |
Protein Properties | Length: 1126 Molecular Weight: 123345 Isoelectric Point: 5.9944 |
Chromosome | Chromosome/Scaffold: 1 Start: 7724620 End: 7736183 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 736 | 1066 | 0 |
DKACSTPKSVLLVPQGRSYLVNATRFKGPCADKLLIQIDGTIVAPDEPKNWDPKNPRNWLDFSKLKGVLFQGGGIIDGSGSKWWASSCKRNKSNPCRGAP TALTIDSSSSVWVKGLTIQNSQQMHFTISRSQSVRIIDVQVSAPEDSPNTDGIHITDSTNVLLQNCKIGTGDDCISIVSGSSNIKMKTIYCGPGHGISIG SLGKDNSSGIVTKVVLDSAFLRGTTNGLRIKTWQGGSGFVRAVRYQNVRMEDVANPILIDQFYCDSPNECKNQTSAVQISQIMYRNISGTTKSAKAMKFA CSDSFPCNNIVVSNINLEKKDGTVETYCNSA |
Full Sequence |
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Protein Sequence Length: 1126 Download |
MQRRNLLFFP RSITNTSLNF TSTASSPSAS LLLDSYCETN PHVDLYSNNR AIDSLIKSGS 60 LASALHLFEK MPIRDVVTWN LLINGYRQHE LPKQAFQYYS EMVFQGIRES SSTFSSVLSV 120 CSNAGLHQEA IQVHSRVIFL GFSSNLYVAG SLVDLYMQMG DCDTALRLFS NLPRRNLAIC 180 NLVLRGFCEL SRSEWLFTMY SAMKEECVKP NGLTFCYLIR GCGNGRFCDE GKQLHCHAIK 240 VGWVEANLFA ANALVDFYCV CGNLIDAKKS FEAIRDEDVI SWNSIVSVFA ASGLLSDALE 300 LFARMQSWGK KPSIRSFVGF LNAAIGCDNI IFGKQIQSHV VKLGFAPGSV HVESALINMY 360 GKCGDIKSSV SVFESVPERT LEICNSLMSS LLHCGIVEDV LELFGLMVDE GIGVDEVTLS 420 TSLKASLVSA FGSLACCRLL HCCAIKSGFE FDTAVSCSLI DAYSKYGHVE LSHQIFEQLH 480 SPNAICFTSI INGYARNGMG REGLEMLEIM AKQGLKPDRV TFLCALTGCS HSGLVEEGRS 540 VFNSMKSIHG IHPDQQHYSC MVDLLGRAGL LDEAEGLLKH APAKSDSVMW SSLLQSCRIH 600 GDTIVGRRAA KVLMELEPED PATYLQASSF YSEIGELEIS MQIREIAIAR RMKREMGHSL 660 IEVNTHGVAE NRVYDDIAMI EELESFDIEE GNDVEFSESP LWTSEHVSKI LVNVDAFGAA 720 GDGVADDTQA FLSAWDKACS TPKSVLLVPQ GRSYLVNATR FKGPCADKLL IQIDGTIVAP 780 DEPKNWDPKN PRNWLDFSKL KGVLFQGGGI IDGSGSKWWA SSCKRNKSNP CRGAPTALTI 840 DSSSSVWVKG LTIQNSQQMH FTISRSQSVR IIDVQVSAPE DSPNTDGIHI TDSTNVLLQN 900 CKIGTGDDCI SIVSGSSNIK MKTIYCGPGH GISIGSLGKD NSSGIVTKVV LDSAFLRGTT 960 NGLRIKTWQG GSGFVRAVRY QNVRMEDVAN PILIDQFYCD SPNECKNQTS AVQISQIMYR 1020 NISGTTKSAK AMKFACSDSF PCNNIVVSNI NLEKKDGTVE TYCNSATGFG YGTVHPAADC 1080 LSSSDKECII NNTENEELAE AIPEDLTHSR VSLALFHPFF YHIQL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03081 | PLN03081 | 2.0e-36 | 44 | 377 | 335 | + pentatricopeptide (PPR) repeat-containing protein; Provisional |
PLN03081 | PLN03081 | 7.0e-87 | 232 | 638 | 407 | + pentatricopeptide (PPR) repeat-containing protein; Provisional |
pfam00295 | Glyco_hydro_28 | 4.0e-104 | 739 | 1067 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 2.0e-114 | 728 | 1076 | 352 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 8.0e-132 | 728 | 1084 | 359 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 0 | 1 | 1106 | 1 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 1 | 1111 | 1 | 1052 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 1 | 1125 | 1 | 1125 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002328586.1 | 0 | 31 | 677 | 45 | 695 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 666 | 1086 | 17 | 438 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-21 | 807 | 1027 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-18 | 811 | 1044 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-18 | 811 | 1044 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-18 | 811 | 1044 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-18 | 811 | 1044 | 80 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE686036 | 291 | 663 | 950 | 0 |
FP038137 | 216 | 786 | 1001 | 0 |
CA929934 | 214 | 763 | 976 | 0 |
EV550328 | 224 | 748 | 971 | 0 |
EH685542 | 232 | 855 | 1085 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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