y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01013800001 |
Family | GH28 |
Protein Properties | Length: 480 Molecular Weight: 52599 Isoelectric Point: 8.7 |
Chromosome | Chromosome/Scaffold: 1 Start: 7453821 End: 7456478 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 106 | 440 | 0 |
GAACKVPGATLEIPSEFKFLIEPITLQGPCMPRLVLQIDGTLLAPPKVASWPKSSLFQWINFKWLHNFTIQGTGTVDGQGSNWWSLSQIHYIQKRSKDIP NMKPTALRFYASYDVTVCNIRIINSPQCHLKFDYSGRVNVTNITISSPENSPNTDGIHLQNTQDVEIQHSNIGCGDDCVSIQTGCSNVHVHHINCGPGHG ISLGGLGKEKSAACVSNLVVDNISVQNALYGVRIKTWQGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKHICKNQTGAVAISGVTYNQIIGTYSVQPIH LACSNNVPCTDVDLIDIQLNPSPRYRSFQQALCWN |
Full Sequence |
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Protein Sequence Length: 480 Download |
MKRDKNPRLV FLLVFLVLIF TTLSITSVDA RKHHSKKSRS HSKHHKHRSG NGNSAPDSEN 60 PPAPAPAPLP PYASYPPQSR IFDVLSFGAK GDGISDDSKA LLAAWGAACK VPGATLEIPS 120 EFKFLIEPIT LQGPCMPRLV LQIDGTLLAP PKVASWPKSS LFQWINFKWL HNFTIQGTGT 180 VDGQGSNWWS LSQIHYIQKR SKDIPNMKPT ALRFYASYDV TVCNIRIINS PQCHLKFDYS 240 GRVNVTNITI SSPENSPNTD GIHLQNTQDV EIQHSNIGCG DDCVSIQTGC SNVHVHHINC 300 GPGHGISLGG LGKEKSAACV SNLVVDNISV QNALYGVRIK TWQGGIGSVK NVSFSNIQVS 360 DVKVPIMIDQ YYCDKHICKN QTGAVAISGV TYNQIIGTYS VQPIHLACSN NVPCTDVDLI 420 DIQLNPSPRY RSFQQALCWN SYGKSQAPLV PSSIDYCLRR HSGSFMEIAK SHEIICQRS* 480 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-66 | 79 | 445 | 374 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-69 | 114 | 424 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 2.0e-69 | 80 | 424 | 352 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-77 | 84 | 451 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-91 | 80 | 467 | 392 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63436.1 | 0 | 99 | 389 | 54 | 344 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266099.1 | 0 | 1 | 479 | 1 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 31 | 476 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 82 | 464 | 1 | 377 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 476 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-26 | 172 | 376 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-17 | 107 | 410 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-17 | 107 | 410 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-17 | 107 | 410 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-17 | 107 | 410 | 1 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |