| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01013838001 |
| Family | CE8 |
| Protein Properties | Length: 398 Molecular Weight: 44023.4 Isoelectric Point: 9.0098 |
| Chromosome | Chromosome/Scaffold: 16 Start: 5068577 End: 5070069 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 74 | 359 | 0 |
| KVSKGGGGNFNKVMAAVDSVPAGNTQRVIIWIGGGVYEEKIKIDRSKPFITFYGSPDDMPMLSFDGTAAKFGTVDSATLIVESDYFMAVNIIVINSSPRP EGRRNGGQAVAVRVSGDKAAFYNCKLVGFQDTLCDDRGRHFFHGCYIEGTVDFIFGSGKSLYLSTELHAKGAGGEFSVITAQARKLESEDNGYSFVHCRV SGSGSNTYLGRAWMSRPRVVFSYTNMSTVVHPLGWSDNFHPERDSLVFYGEYKCMGPGANTSKRAKFAKMLDDDGVRPFVTLNYIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 398 Download |
| MATKMTHTAF PAAASMVFFF LVLPSTVLAD DPQIPDDAIQ LASWFNDVIQ SHNLRRTTLD 60 PVLVKAEERV KIIKVSKGGG GNFNKVMAAV DSVPAGNTQR VIIWIGGGVY EEKIKIDRSK 120 PFITFYGSPD DMPMLSFDGT AAKFGTVDSA TLIVESDYFM AVNIIVINSS PRPEGRRNGG 180 QAVAVRVSGD KAAFYNCKLV GFQDTLCDDR GRHFFHGCYI EGTVDFIFGS GKSLYLSTEL 240 HAKGAGGEFS VITAQARKLE SEDNGYSFVH CRVSGSGSNT YLGRAWMSRP RVVFSYTNMS 300 TVVHPLGWSD NFHPERDSLV FYGEYKCMGP GANTSKRAKF AKMLDDDGVR PFVTLNYIEA 360 SKWLLPPPRL VPRGKRYELV YSKWMMTRYS VQNNILV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 3.0e-83 | 69 | 364 | 308 | + pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-88 | 72 | 364 | 293 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 7.0e-90 | 70 | 366 | 304 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 5.0e-100 | 21 | 366 | 364 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 5 | 370 | 366 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN78808.1 | 0 | 32 | 397 | 3 | 368 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI38547.1 | 0 | 17 | 373 | 8 | 368 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI38548.1 | 0 | 1 | 397 | 1 | 397 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277202.1 | 0 | 30 | 373 | 27 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277388.1 | 0 | 5 | 397 | 1 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 6e-36 | 73 | 364 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 3e-32 | 75 | 364 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-21 | 72 | 336 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-21 | 72 | 336 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-21 | 72 | 336 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
