y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01013839001 |
Family | CE8 |
Protein Properties | Length: 400 Molecular Weight: 44132.8 Isoelectric Point: 8.7917 |
Chromosome | Chromosome/Scaffold: 16 Start: 5102506 End: 5106639 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 74 | 358 | 0 |
KVSKSGGGDFKTVTDAVNSVPEGNAGRVIIWIGGGVYEEKIKIDRTKPFVTFYGSPDHMPMLSFDGTAAKYGTVDSASLIVESHYFMMVNIIVINSSPKP DGKRKGAQAVALRISGDKAAFYNSKLIGFQDTLCDDRNRHFFKKCYIEGTVDFIFGSGKSIFLSTEVHAMGDGAMPTVITAHARNLESEDTGYSFVHCTI SGTGSTTFLGRAWMDRPKVVFSHTYMSSVVNPLGWSNNLHPDRDSMVFFGEYNCLGPGANMSRRAKFTKKLDFNGAKPYISLNYI |
Full Sequence |
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Protein Sequence Length: 400 Download |
MPTRTTQIAF PATAVVALVL LLLPLIILAD DLQIPNDKTQ LTAWFGRTIK NYKLRRATLD 60 PELVKAEDNL KIIKVSKSGG GDFKTVTDAV NSVPEGNAGR VIIWIGGGVY EEKIKIDRTK 120 PFVTFYGSPD HMPMLSFDGT AAKYGTVDSA SLIVESHYFM MVNIIVINSS PKPDGKRKGA 180 QAVALRISGD KAAFYNSKLI GFQDTLCDDR NRHFFKKCYI EGTVDFIFGS GKSIFLSTEV 240 HAMGDGAMPT VITAHARNLE SEDTGYSFVH CTISGTGSTT FLGRAWMDRP KVVFSHTYMS 300 SVVNPLGWSN NLHPDRDSMV FFGEYNCLGP GANMSRRAKF TKKLDFNGAK PYISLNYIRA 360 SSWLLPPPNL SAHLLIFRVD FHDQESGCQQ CPQFPIVCM* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-80 | 72 | 364 | 295 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-86 | 68 | 366 | 306 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-86 | 71 | 364 | 305 | + pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-95 | 65 | 366 | 315 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 36 | 370 | 335 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN66682.1 | 0 | 1 | 373 | 1 | 373 | hypothetical protein [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 1 | 370 | 1 | 370 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38549.1 | 0 | 1 | 399 | 1 | 399 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277388.1 | 0 | 6 | 370 | 2 | 366 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277412.1 | 0 | 1 | 363 | 1 | 363 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-36 | 57 | 364 | 3 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-34 | 75 | 364 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-19 | 72 | 336 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-19 | 72 | 336 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-19 | 72 | 336 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |