| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01014134001 |
| Family | CBM57 |
| Protein Properties | Length: 1022 Molecular Weight: 113365 Isoelectric Point: 5.9222 |
| Chromosome | Chromosome/Scaffold: 19 Start: 669185 End: 677944 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM57 | 409 | 569 | 6.3e-28 |
| INCGGGKMSFEGNEYDKDVDGRGASHFLADYLERWAYSSTGVFSKEDTAYLANNTSLKIIGPEFYQTARVAPNSLKYYGLCLQKGSYKVRLHFAEIMFTN DQTFSSLGKRIFDVSIQGNVVLKDFNIMEEAKGAGKGIYKDFDDVLVNGSTLEIHLYWSGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1022 Download |
| MENLSLILLL FLGFFCFVEF TSHAQDIPED EALNTISSKL NISAKLNNSY WSVSQSSCRE 60 GRDFNVNITS EIRSLVTCNC TFVNSTVCHV TNIQLKGLNL TGVLPAEFGS LKYLQELDLT 120 RNYFNGSIPT SFSRLPLVNL SLLGNRLSGS IPKEIGGIAT LEELILEDNQ LEGPLNENLG 180 NLGRLRRLLL SGNNFTGTIP QNFRNLKNLT DFRIDGNNLF GKIPDLIGNW TKLDKLFLQG 240 TSMEGPIPST ISQLKNLTEL MISNLNGASM SFPDLQDMKN MTRLALRDCL ITGQIPPYLG 300 EMKKLKILDL SFNRLTGQIP ESLQSLDSID YMFLNDNLLS GEVPRGILNW KENVDLSYNN 360 FTGSPPSTCQ QNDVSFVSSY SSSKSSTVQW CLKKDLPCPE KPRYHSFFIN CGGGKMSFEG 420 NEYDKDVDGR GASHFLADYL ERWAYSSTGV FSKEDTAYLA NNTSLKIIGP EFYQTARVAP 480 NSLKYYGLCL QKGSYKVRLH FAEIMFTNDQ TFSSLGKRIF DVSIQGNVVL KDFNIMEEAK 540 GAGKGIYKDF DDVLVNGSTL EIHLYWSGKG TKSIPVRGVY GPLISAIAVT PNFDPNAGLS 600 VGAIIGIVMA SCVVLAFILA LLWTKGYLGG KDLEDKELRA LELQTGYFSL RQIKAATNNF 660 DSANKIGEGG FGPVYKGVLS DGSIIAVKQL SSKSKQGNRE FVNEIGMISA LQHPNLVRLY 720 GCCIEGNQLL LIYEYMENNS LARALFGREE HRLHLDWPTR KKICLGIARG LAYLHEESRL 780 KIVHRDIKAT NVLLDKDLSA KISDFGLAKL DEEENTHIST RIAGTIGYMA PEYAMRGYLT 840 DKADVYSFGV VALEIVSGKS NTNYRPKEEF VYLLDWAYVL HEQGNILELV DPILGSNYSE 900 EEAAKMLNLS LLCTNPSPTL RPSMSSVVSM LEGKIAVQAP IVKKSSMNQD MRFKAFEKLS 960 QDSQSHVSAF SQESQVQGSI SMNGPWIDSS VSLTSREDTR DHSSSSKLLP ELPDLYDVHL 1020 D* 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00180 | PKc | 5.0e-50 | 666 | 855 | 194 | + Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. | ||
| cd00192 | PTKc | 2.0e-53 | 664 | 932 | 284 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
| pfam11721 | Malectin | 5.0e-54 | 405 | 587 | 185 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| smart00221 | STYKc | 4.0e-54 | 665 | 931 | 278 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
| smart00219 | TyrKc | 9.0e-55 | 665 | 931 | 278 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI20142.1 | 0 | 18 | 1021 | 18 | 1021 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI20151.1 | 0 | 13 | 1021 | 58 | 1063 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002283464.1 | 0 | 13 | 1021 | 13 | 1018 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002283477.1 | 0 | 13 | 1021 | 13 | 1020 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002283521.1 | 0 | 18 | 1021 | 18 | 1023 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ulz_A | 0 | 634 | 933 | 8 | 308 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3uim_A | 0 | 634 | 933 | 8 | 308 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
| PDB | 3tl8_H | 0 | 634 | 933 | 16 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_G | 0 | 634 | 933 | 16 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_D | 0 | 634 | 933 | 16 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
