| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01014641001 |
| Family | CE8 |
| Protein Properties | Length: 360 Molecular Weight: 39291.8 Isoelectric Point: 9.1524 |
| Chromosome | Chromosome/Scaffold: 19 Start: 8126479 End: 8128014 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 61 | 352 | 0 |
| IVVDKNGGGDSDTIQGAVDMVPVQNKQRVKIQIRPGIYREKVYVPASKPYISFIGSQIRSDDVVITWHDKASDLDSNGFRLGTVRTASVTVESDYFCAAG ITIENSVVARPGVPGMQAVALNINGDKAMFYNVRLLGAQDTLMDLSGTHYFNQCYIQGSIDFIFGGARSIYQGCVIESIATTSGAIAAHRMESPDDGTGF SFVNCTIIGTGKIYLGRAWGKYSTAVYSNSRIADMITPSGWSDWNKPERRRTAMFAEFNNTGKGADRSRRVKWSKSLSLEEAMPFVDLNFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 360 Download |
| MGFSGFSASL CVVGLILVLS GGGCEGKAND NLRFITWSDF TARRARPLLT VKCRNNTTKV 60 IVVDKNGGGD SDTIQGAVDM VPVQNKQRVK IQIRPGIYRE KVYVPASKPY ISFIGSQIRS 120 DDVVITWHDK ASDLDSNGFR LGTVRTASVT VESDYFCAAG ITIENSVVAR PGVPGMQAVA 180 LNINGDKAMF YNVRLLGAQD TLMDLSGTHY FNQCYIQGSI DFIFGGARSI YQGCVIESIA 240 TTSGAIAAHR MESPDDGTGF SFVNCTIIGT GKIYLGRAWG KYSTAVYSNS RIADMITPSG 300 WSDWNKPERR RTAMFAEFNN TGKGADRSRR VKWSKSLSLE EAMPFVDLNF IAAEKWLRL* 360 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 7.0e-91 | 56 | 358 | 312 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 5.0e-101 | 59 | 357 | 303 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 2.0e-104 | 59 | 357 | 301 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 4.0e-110 | 41 | 359 | 321 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 0 | 28 | 359 | 332 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE67559.1 | 0 | 33 | 359 | 47 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_200370.1 | 0 | 64 | 359 | 85 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002264297.1 | 0 | 1 | 359 | 1 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298857.1 | 0 | 56 | 359 | 15 | 318 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522727.1 | 0 | 34 | 359 | 58 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 9.99995e-41 | 61 | 358 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-36 | 62 | 358 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.00000000000002 | 68 | 294 | 41 | 282 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.0000000000006 | 73 | 294 | 20 | 258 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.0000000000006 | 73 | 294 | 20 | 258 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
